RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 APEHP13798 732 aaKnown RBP18.91■□□□□ 0.62
CLN3-207ENST00000395653 RPS6KA3P51812 740 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 FMODQ06828 376 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 SPOCK1Q08629 439 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 MESTQ5EB52 335 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 SLC25A47Q6Q0C1 308 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 MDP1Q86V88 176 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 DEPDC4Q8N2C3 294 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 NEUROG1Q92886 237 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 DENND2DQ9H6A0 471 aaPredicted RBP18.91■□□□□ 0.62
CLN3-207ENST00000395653 ZNF224Q9NZL3 707 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 CADP27708 2225 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 IGKV1D-43A0A0B4J1Z2 117 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 EBAG9O00559 213 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 FKBP6O75344 327 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 UBL3O95164 117 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 TXNDC12O95881 172 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 HLA-HP01893 362 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 SLC6A6P31641 620 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 CDH11P55287 796 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 CBX1P83916 185 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 KRR1Q13601 381 aaKnown RBP18.91■□□□□ 0.62
CLN3-207ENST00000395653 GSG1Q2KHT4 349 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 RPL13AP3Q6NVV1 102 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 ZNF620Q6ZNG0 422 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 SKA3Q8IX90 412 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 CLDN22Q8N7P3 220 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 PIGTQ969N2 578 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 UGT2A1Q9Y4X1 527 aa18.91■□□□□ 0.62
CLN3-207ENST00000395653 TEX13CA0A0J9YWL9 993 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 PRSS37A4D1T9 235 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 GASTP01350 101 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 CECR9P0C854 216 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 MRPS34P82930 218 aaKnown RBP18.9■□□□□ 0.62
CLN3-207ENST00000395653 C1orf146Q5VVC0 180 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 DPPA2Q7Z7J5 298 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 ADCK1Q86TW2 530 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 AQP11Q8NBQ7 271 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 SLCO4A1Q96BD0 722 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 RASD2Q96D21 266 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 CCL19Q99731 98 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 DGCR6LQ9BY27 220 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 NOX3Q9HBY0 568 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 CISD1Q9NZ45 108 aaKnown RBP18.9■□□□□ 0.62
CLN3-207ENST00000395653 POU2F3Q9UKI9 436 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 ITGB1BP2Q9UKP3 347 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 IER3IP1Q9Y5U9 82 aa18.9■□□□□ 0.62
CLN3-207ENST00000395653 SLC22A23A1A5C7 686 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 ARRDC5A6NEK1 342 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 GNGT2O14610 69 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 IMPA2O14732 288 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 ARPC3O15145 178 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 CD79AP11912 226 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 NPR2P20594 1047 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 ERFP50548 548 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 IDH3GP51553 393 aaPredicted RBP18.89■□□□□ 0.61
CLN3-207ENST00000395653 NAAAQ02083 359 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 DEFB113Q30KQ7 82 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 IGFBPL1Q8WX77 278 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 NSMAFQ92636 917 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 SAMD8Q96LT4 415 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 FOXC2Q99958 501 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 SIAEQ9HAT2 523 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 BEX4Q9NWD9 120 aaPredicted RBP18.89■□□□□ 0.61
CLN3-207ENST00000395653 FBXL3Q9UKT7 428 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 CDH10Q9Y6N8 788 aa18.89■□□□□ 0.61
CLN3-207ENST00000395653 H7C1C5 153 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 TMCC2O75069 709 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 PPP1R3DO95685 299 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 CRYAAP02489 173 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 CELA3BP08861 270 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 GSTM3P21266 225 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 ART1P52961 327 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 LCN6P62502 163 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 RAB1AP62820 205 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 PIGFQ07326 219 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 NPRL3Q12980 569 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 RASSF6Q6ZTQ3 369 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 FOXL2NBQ6ZUU3 175 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 IL17RDQ8NFM7 739 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 OR10G2Q8NGC3 310 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 GIPC3Q8TF64 312 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 ZNF75AQ96N20 296 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 ERMAPQ96PL5 475 aaPredicted RBP18.88■□□□□ 0.61
CLN3-207ENST00000395653 SH3GL3Q99963 347 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 KCNS3Q9BQ31 491 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 IL20Q9NYY1 176 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 VSX1Q9NZR4 365 aaPredicted RBP18.88■□□□□ 0.61
CLN3-207ENST00000395653 DNAJB9Q9UBS3 223 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 MOKQ9UQ07 419 aa18.88■□□□□ 0.61
CLN3-207ENST00000395653 E7EQL1 145 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 ATP6V1G2-DDX39BF2Z307 99 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 SOCS2O14508 198 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 CIB2O75838 187 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 RAB36O95755 333 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 DANCRP0C864 163 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 GIPRP48546 466 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 SLC36A2Q495M3 483 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 B3GLCTQ6Y288 498 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 SLC16A14Q7RTX9 510 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms