RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SLITRK2Q9H156 845 aa18.69■□□□□ 0.58
CLK3-202ENST00000395066 KCNG2Q9UJ96 466 aa18.69■□□□□ 0.58
CLK3-202ENST00000395066 GTF2A1LQ9UNN4 478 aa18.69■□□□□ 0.58
CLK3-202ENST00000395066 CYP8B1Q9UNU6 501 aa18.69■□□□□ 0.58
CLK3-202ENST00000395066 TCRBV16S1A1N1A0A5B0 115 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 UBE2QL1A1L167 161 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 FAM221BA6H8Z2 402 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 TEX46H3BTG2 121 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 TACSTD2P09758 323 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 TACR3P29371 465 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 PSMD4P55036 377 aaKnown RBP18.68■□□□□ 0.58
CLK3-202ENST00000395066 ZNF595Q8IYB9 648 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 OR52H1Q8NGJ2 320 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 OR2G2Q8NGZ5 317 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 ZNF563Q8TA94 476 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 ADOQ96SZ5 270 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 EVA1AQ9H8M9 152 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 PCNX3Q9H6A9 2034 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 COL4A2P08572 1712 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 PCDH15Q96QU1 1955 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 OR4C45A6NMZ5 311 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 DOK2O60496 412 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 IFI6P09912 130 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 ASAH2BP0C7U1 165 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 ICAM2P13598 275 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 CENPAP49450 140 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 H2BFSP57053 126 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 GK2Q14410 553 aaPredicted RBP18.68■□□□□ 0.58
CLK3-202ENST00000395066 SLC6A19Q695T7 634 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 LRRN1Q6UXK5 716 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 BVESQ8NE79 360 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 LDAHQ9H6V9 325 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 MED11Q9P086 117 aa18.68■□□□□ 0.58
CLK3-202ENST00000395066 FXYD6-FXYD2A0A087WZ82 144 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 LDOC1O95751 146 aaPredicted RBP18.67■□□□□ 0.58
CLK3-202ENST00000395066 RABIFP47224 123 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 IGLV3-21P80748 117 aaPredicted RBP18.67■□□□□ 0.58
CLK3-202ENST00000395066 GSG1LQ6UXU4 331 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 STPG2Q8N412 459 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 C15orf40Q8WUR7 153 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 FBXW5Q969U6 566 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 OR8D2Q9GZM6 311 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 FXYD6Q9H0Q3 95 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 CLEC1BQ9P126 229 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 MNDAP41218 407 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 DMWDQ09019 674 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 FNDC7Q5VTL7 733 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 OR4C16Q8NGL9 310 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 DVL3Q92997 716 aaPredicted RBP18.67■□□□□ 0.58
CLK3-202ENST00000395066 GAL3ST4Q96RP7 486 aa18.67■□□□□ 0.58
CLK3-202ENST00000395066 SDK1Q7Z5N4 2213 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 TRBV5-5A0A0J9YX44 114 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 SPTY2D1-AS1A0A0U1RR47 76 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 NUPL2O15504 423 aaKnown RBP18.66■□□□□ 0.58
CLK3-202ENST00000395066 GLSO94925 669 aaPredicted RBP18.66■□□□□ 0.58
CLK3-202ENST00000395066 UTS2O95399 124 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 RLN1P04808 185 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 ZNF35P13682 527 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 GFERP55789 205 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 ISXQ2M1V0 245 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 SLC36A1Q7Z2H8 476 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 FAM160A2Q8N612 972 aaPredicted RBP18.66■□□□□ 0.58
CLK3-202ENST00000395066 OR8S1Q8NH09 359 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 SLC22A13Q9Y226 551 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 CFAP54Q96N23 3096 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 SCDO00767 359 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 HLA-DQA2P01906 255 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 KIR3DL2P43630 455 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 SLC25A1P53007 311 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 ZMYND11Q15326 602 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 RBMS2Q15434 407 aaKnown RBP18.66■□□□□ 0.58
CLK3-202ENST00000395066 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.66■□□□□ 0.58
CLK3-202ENST00000395066 HSD17B13Q7Z5P4 300 aaPredicted RBP18.66■□□□□ 0.58
CLK3-202ENST00000395066 DEFB119Q8N690 84 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.66■□□□□ 0.58
CLK3-202ENST00000395066 DMRTA2Q96SC8 542 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 SLC19A3Q9BZV2 496 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 UBQLN4Q9NRR5 601 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 ETV7Q9Y603 341 aa18.66■□□□□ 0.58
CLK3-202ENST00000395066 RP1P56715 2156 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 CHURC1-FNTBB4DL54 471 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 ALOX5APP20292 161 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 FAUP35544 74 aaKnown RBP18.65■□□□□ 0.58
CLK3-202ENST00000395066 WDR38Q5JTN6 314 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 PRAMEF17Q5VTA0 474 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 CHRDL2Q6WN34 429 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 PDZD9Q8IXQ8 264 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 OR1S1Q8NH92 325 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 TSEN15Q8WW01 171 aaKnown RBP18.65■□□□□ 0.58
CLK3-202ENST00000395066 TSLPQ969D9 159 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 SLC25A36Q96CQ1 311 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 SOHLH2Q9NX45 425 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 SLC6A5Q9Y345 797 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 ZNF264O43296 627 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 ITGA5P08648 1049 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 RLN3Q8WXF3 142 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 LRRC61Q9BV99 259 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 FBXL2Q9UKC9 423 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 GMEB2Q9UKD1 530 aa18.65■□□□□ 0.58
CLK3-202ENST00000395066 HS3ST3A1Q9Y663 406 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms