RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 A0A0B4J2E0 115 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 A0A1B0GUS0 222 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 A0A1B0GX12 115 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 SDHDO14521 159 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 DHHO43323 396 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 MGRN1O60291 552 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 UBOX5O94941 541 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 IGHV1-46P01743 117 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 IGHMP01871 453 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 BMP2P12643 396 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 APLNRP35414 380 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 MTNR1AP48039 350 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 GLO1Q04760 184 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 RGNQ15493 299 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 ZNF718Q3SXZ3 478 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 C6orf10Q5SRN2 563 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 DHRS4L2Q6PKH6 230 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 WDR88Q6ZMY6 472 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 SLC35D2Q76EJ3 337 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 ZNF771Q7L3S4 317 aaPredicted RBP11.72□□□□□ -0.53
VPS29-201ENST00000360579 KRT73Q86Y46 540 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 C1orf174Q8IYL3 243 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 SPICQ8N5J4 248 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 RBM15BQ8NDT2 890 aaKnown RBP11.72□□□□□ -0.53
VPS29-201ENST00000360579 OR4K5Q8NGD3 323 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 MAL2Q969L2 176 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 VPS33AQ96AX1 596 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 SLC25A44Q96H78 314 aaPredicted RBP11.72□□□□□ -0.53
VPS29-201ENST00000360579 DIRC2Q96SL1 478 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 MS4A7Q9GZW8 240 aaPredicted RBP11.72□□□□□ -0.53
VPS29-201ENST00000360579 EVA1AQ9H8M9 152 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 MMP24Q9Y5R2 645 aa11.72□□□□□ -0.53
VPS29-201ENST00000360579 PRORSD1PA6NEY8 169 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 TRPC5OSA6NMA1 111 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 C11orf98E9PRG8 122 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 TM9SF1O15321 606 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 SPRY3O43610 288 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 ADH4P08319 380 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 ZNF12P17014 697 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 MMP15P51511 669 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 RGS8P57771 180 aaPredicted RBP11.71□□□□□ -0.53
VPS29-201ENST00000360579 HSF2Q03933 536 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 STX3Q13277 289 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 SLC9A3R2Q15599 337 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 OR1Q1Q15612 314 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 GTDC1Q4AE62 458 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 ZMAT1Q5H9K5 638 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 KLF17Q5JT82 389 aaPredicted RBP11.71□□□□□ -0.53
VPS29-201ENST00000360579 LRFN4Q6PJG9 635 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 KLHL36Q8N4N3 616 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 BHLHE22Q8NFJ8 381 aaPredicted RBP11.71□□□□□ -0.53
VPS29-201ENST00000360579 GTF3AQ92664 365 aaKnown RBP11.71□□□□□ -0.53
VPS29-201ENST00000360579 ZNF48Q96MX3 618 aaPredicted RBP11.71□□□□□ -0.53
VPS29-201ENST00000360579 MMP26Q9NRE1 261 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 PNPOQ9NVS9 261 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 ZIM2Q9NZV7 527 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 ARMCX1Q9P291 453 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 EIF3KQ9UBQ5 218 aaKnown RBP11.71□□□□□ -0.53
VPS29-201ENST00000360579 SLC13A4Q9UKG4 626 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 ZDHHC8Q9ULC8 765 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 NPTNQ9Y639 398 aa11.71□□□□□ -0.53
VPS29-201ENST00000360579 LRRN3E7EW58 273 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 CLIC1O00299 241 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 ZNF500O60304 480 aaPredicted RBP11.7□□□□□ -0.54
VPS29-201ENST00000360579 MDKP21741 143 aaPredicted RBP11.7□□□□□ -0.54
VPS29-201ENST00000360579 EPHA3P29320 983 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 ZNF84P51523 738 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 TMEM155Q4W5P6 130 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 ZNF362Q5T0B9 420 aaPredicted RBP11.7□□□□□ -0.54
VPS29-201ENST00000360579 LEG1Q6P5S2 330 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 C16orf87Q6PH81 154 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 C17orf107Q6ZR85 190 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 RANBP3LQ86VV4 465 aaPredicted RBP11.7□□□□□ -0.54
VPS29-201ENST00000360579 BCL6BQ8N143 479 aaPredicted RBP11.7□□□□□ -0.54
VPS29-201ENST00000360579 TMIGD2Q96BF3 282 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 SLC19A3Q9BZV2 496 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 KCNN2Q9H2S1 579 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 SSU72Q9NP77 194 aaKnown RBP11.7□□□□□ -0.54
VPS29-201ENST00000360579 INSIG2Q9Y5U4 225 aa11.7□□□□□ -0.54
VPS29-201ENST00000360579 A8MXK9 166 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 H3BSA7 217 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 HDAC3O15379 428 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 RNF13O43567 381 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 KNG1P01042 644 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 IGHV2-70P01814 119 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 IGHG1P01857 330 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 CD55P08174 381 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 QDPRP09417 244 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 SBK2P0C263 348 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 PGA4P0DJD7 388 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 PGA3P0DJD8 388 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 PPIAL4GP0DN37 164 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 BGNP21810 368 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 CCNOP22674 350 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 STOMP27105 288 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 CDH12P55289 794 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 CEP85LQ5SZL2 805 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 MBNL2Q5VZF2 373 aaKnown RBP11.69□□□□□ -0.54
VPS29-201ENST00000360579 REEP3Q6NUK4 255 aa11.69□□□□□ -0.54
VPS29-201ENST00000360579 C9orf139Q6ZV77 190 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms