RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 FAM227AF5H4B4 570 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 CLDN1O95832 211 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 IGHG1P01857 330 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 G6PCP35575 357 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 OR51A4Q8NGJ6 313 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 OR13C5Q8NGS8 318 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 SLC6A18Q96N87 628 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 ZNF160Q9HCG1 818 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 B4GALT6Q9UBX8 382 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 MBPP02686 304 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-203ENST00000353578 FKBP2P26885 142 aaKnown RBP11.67□□□□□ -0.54
COL6A3-203ENST00000353578 WASP42768 502 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 IL20RBQ6UXL0 311 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 DUSP18Q8NEJ0 188 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 ARNT2Q9HBZ2 717 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 FCF1Q9Y324 198 aaKnown RBP11.67□□□□□ -0.54
COL6A3-203ENST00000353578 PDHXO00330 501 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 PLCXD2Q0VAA5 305 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 SLC10A6Q3KNW5 377 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 NSUN5P2Q63ZY6 315 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 REM2Q8IYK8 340 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-203ENST00000353578 COL25A1Q9BXS0 654 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM191AQ9H0A3 160 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 FAM206AQ9NX38 181 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 PCDHGA9Q9Y5G4 932 aaKnown RBP11.67□□□□□ -0.54
COL6A3-203ENST00000353578 POM121BA6NF01 834 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 DCAF7P61962 342 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 DCXRQ7Z4W1 244 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 ZNF384Q8TF68 577 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 ACY3Q96HD9 319 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 AKR1E2Q96JD6 320 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 NOX4Q9NPH5 578 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 INIPQ9NRY2 104 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 TREX1Q9NSU2 369 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 SLC5A12Q1EHB4 618 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 VITQ6UXI7 678 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 ARHGEF39Q8N4T4 335 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 LHX6Q9UPM6 363 aa11.67□□□□□ -0.54
COL6A3-203ENST00000353578 TBX19O60806 448 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 CLEC3AO75596 197 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 SNRPBP14678 240 aaKnown RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 SLC10A2Q12908 348 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 BTNL3Q6UXE8 466 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 OR4N5Q8IXE1 308 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 PELI3Q8N2H9 469 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 RBM38Q9H0Z9 239 aaKnown RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 FOCADQ5VW36 1801 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 TERTO14746 1132 aaKnown RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 SDC1P18827 310 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 GALR1P47211 349 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 ARRB1P49407 418 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 HLXQ14774 488 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 NAGSQ8N159 534 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 SORBS1Q9BX66 1292 aaKnown RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 GPR55Q9Y2T6 319 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 SULT2B1O00204 365 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 GAB1Q13480 694 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 PIN1Q13526 163 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 OPALINQ96PE5 141 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM9BQ9NQ34 198 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 CYSLTR2Q9NS75 346 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 INTS12Q96CB8 462 aaKnown RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 MTCP1P56278 107 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 PAFAH1B2P68402 229 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 SYT14P1Q58G82 188 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 RNF111Q6ZNA4 994 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 OR4A16Q8NH70 328 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 HGDQ93099 445 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 TMEM106CQ9BVX2 250 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 TMPRSS13Q9BYE2 586 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 HSPB8Q9UJY1 196 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 C11orf98E9PRG8 122 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 ERVFRD-1P60508 538 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 SPCS3P61009 180 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 PSMG4Q5JS54 123 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 LHX4Q969G2 390 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 TTTY10Q9BZA0 68 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 ACPTQ9BZG2 426 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 AKAP6Q13023 2319 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 NME2P1O60361 137 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 OR1D2P34982 312 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 CSN1S1P47710 185 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 DGKEP52429 567 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 TPBGQ13641 420 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 AADACL3Q5VUY0 350 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 C22orf39Q6P5X5 142 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 OR2W3Q7Z3T1 314 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 GPR137CQ8N3F9 429 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 REEP6Q96HR9 211 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 SGCZQ96LD1 299 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 BANF2Q9H503 90 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 PLEK2Q9NYT0 353 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 METTL1Q9UBP6 276 aaKnown RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 AJAP1Q9UKB5 411 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 NPIPB15A6NHN6 443 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-203ENST00000353578 MFNGO00587 321 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 RD3LP0DJH9 198 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 FCGR2CP31995 323 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 ETFDHQ16134 617 aa11.66□□□□□ -0.54
COL6A3-203ENST00000353578 LINC00518Q8N0U6 118 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms