RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 DAPP51397 102 aa12.32□□□□□ -0.44
COL6A3-202ENST00000347401 ADAM5Q6NVV9 412 aa12.32□□□□□ -0.44
COL6A3-202ENST00000347401 GALNT16Q8N428 558 aa12.32□□□□□ -0.44
COL6A3-202ENST00000347401 SLC39A7Q92504 469 aa12.32□□□□□ -0.44
COL6A3-202ENST00000347401 CCKARP32238 428 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 GPM6BQ13491 265 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 PADI1Q9ULC6 663 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 SSUH2Q9Y2M2 353 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 GPR75O95800 540 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 F2RP25116 425 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 OSTM1Q86WC4 334 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 DTX3Q8N9I9 347 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 PDCD1LG2Q9BQ51 273 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 VN1R3Q9BXE9 311 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 RAB18Q9NP72 206 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 PRSS16Q9NQE7 514 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 DLL4Q9NR61 685 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 TAS2R5Q9NYW4 299 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 IL17CQ9P0M4 197 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 EMCNQ9ULC0 261 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 GATCO43716 136 aaKnown RBP12.31□□□□□ -0.44
COL6A3-202ENST00000347401 GASTP01350 101 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 TPOP07202 933 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 HYAL2Q12891 473 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 YOD1Q5VVQ6 348 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-202ENST00000347401 WDTC1Q8N5D0 677 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 GJC3Q8NFK1 279 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 OR11L1Q8NGX0 322 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 IL1F10Q8WWZ1 152 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 HLA-CQ95604 372 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 NEIL2Q969S2 332 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 OR2A14Q96R47 310 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 LMAN1LQ9HAT1 526 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 AK3Q9UIJ7 227 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 NDRG4Q9ULP0 352 aaKnown RBP12.31□□□□□ -0.44
COL6A3-202ENST00000347401 GBF1Q92538 1859 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 NRAPQ86VF7 1730 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 C17orf105B2RV13 164 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 GLCEO94923 617 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 UBE2G1P62253 170 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 HHEXQ03014 270 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 IHHQ14623 411 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 BOLLQ8N9W6 283 aaKnown RBP12.31□□□□□ -0.44
COL6A3-202ENST00000347401 BPIFCQ8NFQ6 507 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 DYNC2LI1Q8TCX1 351 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 MAP3K3Q99759 626 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 OR14J1Q9UGF5 321 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 TRAV1-2A0A0B4J238 106 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 SELEP16581 610 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 ARSDP51689 593 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 APH1AQ96BI3 265 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 SLC35A4Q96G79 324 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 SLC17A9Q9BYT1 436 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 GOLT1BQ9Y3E0 138 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 DOCK1Q14185 1865 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 IL5P05113 134 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 GM2AP17900 193 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 GPX2P18283 190 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 NME2P22392 152 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 NOL4LQ96MY1 436 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-202ENST00000347401 HRASLSQ9HDD0 168 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 ZNF724A8MTY0 619 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 PHF1O43189 567 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-202ENST00000347401 TMEM64Q6YI46 380 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 DGAT2L6Q6ZPD8 337 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 SMIM19Q96E16 107 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 SNX11Q9Y5W9 270 aa12.31□□□□□ -0.44
COL6A3-202ENST00000347401 LRRC30A6NM36 301 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 SCGB1C2P0DMR2 95 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 EPHA4P54764 986 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 MTURNQ8N3F0 131 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 TRAPPC4Q9Y296 219 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 MTHFD2P13995 350 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 CRMP1Q14194 572 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 SMIM12Q96EX1 92 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 ARHGDIGQ99819 225 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 TRBV4-1A0A0J9YWV2 114 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 TMEM88BA6NKF7 163 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 GLAP06280 429 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 RPL17P18621 184 aaKnown RBP12.3□□□□□ -0.44
COL6A3-202ENST00000347401 VIPR2P41587 438 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 C17orf67Q0P5P2 114 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 RTL8BQ17RB0 113 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 ARHGEF39Q8N4T4 335 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 REEP6Q96HR9 211 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 BARHL1Q9BZE3 327 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 CSAG2Q9Y5P2 127 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 ARFGEF3Q5TH69 2177 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 ELOA3CA0A087WX78 387 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-202ENST00000347401 PTHLHP12272 177 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 CTRB1P17538 263 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 PNRC1Q12796 327 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-202ENST00000347401 PNLIPRP3Q17RR3 467 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 CTRB2Q6GPI1 263 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 GPX8Q8TED1 209 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 SLC25A43Q8WUT9 341 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-202ENST00000347401 A0A0A6YYJ9 748 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 BCL2L11O43521 198 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 ZFAND5O76080 213 aa12.3□□□□□ -0.44
COL6A3-202ENST00000347401 USF1P22415 310 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms