RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 LYSMD1Q96S90 227 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 CNN2Q99439 309 aaKnown RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 RSRP1Q9BUV0 290 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 NMES1Q9C002 83 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ZNF350Q9GZX5 532 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 WNT5BQ9H1J7 359 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 TRPC4Q9UBN4 977 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 WASF3Q9UPY6 502 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 MOKQ9UQ07 419 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ZNF281Q9Y2X9 895 aa7.42□□□□□ -1.22
ATG4A-201ENST00000343524 ZFP37Q9Y6Q3 630 aaPredicted RBP7.42□□□□□ -1.22
ATG4A-201ENST00000343524 CKAP5Q14008 2032 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 OR5H15A6NDH6 313 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 TBC1D3BA6NDS4 549 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 CXorf65A6NEN9 183 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 OR5H1A6NKK0 313 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 CPSF4LA6NMK7 179 aaKnown RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 FAM157AC9JC47 383 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 BHLHE40O14503 412 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 BRINP1O60477 761 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 MOSPD3O75425 235 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 MED6O75586 246 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 RAB3DO95716 219 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 PTBP3O95758 552 aaKnown RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 PLGP00747 810 aaPredicted RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 IL2RAP01589 272 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 RPN2P04844 631 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 FCGR3AP08637 254 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 TBC1D3HP0C7X1 549 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 ATP1B2P14415 290 aaPredicted RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 PGAM2P15259 253 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 CFPP27918 469 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 CD80P33681 288 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 SULT1A2P50226 295 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 HSD17B7P56937 341 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 RPS11P62280 158 aaKnown RBP eCLIP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 HTRA4P83105 476 aaPredicted RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 HSPB3Q12988 150 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 ACTBL2Q562R1 376 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 RNF219Q5W0B1 726 aaPredicted RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 TBC1D3GQ6DHY5 549 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 ARHGAP11AQ6P4F7 1023 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 PSRC1Q6PGN9 363 aaPredicted RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 BTNL8Q6UX41 500 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 HEPN1Q6WQI6 88 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 SPNS3Q6ZMD2 512 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 TMED4Q7Z7H5 227 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 CDK20Q8IZL9 346 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 ZDHHC22Q8N966 263 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 CLEC1AQ8NC01 280 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 OR10D4PQ8NGN7 298 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 ST7LQ8TDW4 575 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 MITD1Q8WV92 249 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 AUTS2Q8WXX7 1259 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 IRF7Q92985 503 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 PELI1Q96FA3 418 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 MISP3Q96FF7 219 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 GALNT14Q96FL9 552 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 SLC41A3Q96GZ6 507 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 RBM18Q96H35 190 aaKnown RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 AKR1E2Q96JD6 320 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 PTCHD1Q96NR3 888 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 PRRT1Q99946 306 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 WFDC6Q9BQY6 131 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 LGR4Q9BXB1 951 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 KLF16Q9BXK1 252 aaPredicted RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 PTGES2Q9H7Z7 377 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 CERS4Q9HA82 394 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 SIRT3Q9NTG7 399 aaPredicted RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 CUTCQ9NTM9 273 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 CHD7Q9P2D1 2997 aa7.41□□□□□ -1.22
ATG4A-201ENST00000343524 ZNF230Q9UIE0 474 aaPredicted RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 HELZP42694 1942 aaKnown RBP7.41□□□□□ -1.22
ATG4A-201ENST00000343524 A0A1W2PPK0 400 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 CASTOR2A6NHX0 329 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 H3BNC9 293 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 SYT7O43581 403 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 B3GAT3O94766 335 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 SLCO2B1O94956 709 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 AIFM1O95831 613 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 CRHP06850 196 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 THBS1P07996 1170 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 MRPL3P09001 348 aaKnown RBP7.4□□□□□ -1.22
ATG4A-201ENST00000343524 NME2P22392 152 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 SLC2A5P22732 501 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 IGFALSP35858 605 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 PPICP45877 212 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 CSNK1DP48730 415 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 PCBP4P57723 403 aaKnown RBP7.4□□□□□ -1.22
ATG4A-201ENST00000343524 TAS2R31P59538 309 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 TNFRSF9Q07011 255 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 CCINQ13939 588 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 MRPL58Q14197 206 aaKnown RBP7.4□□□□□ -1.22
ATG4A-201ENST00000343524 GAMTQ14353 236 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 GGTLC2Q14390 218 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 SURF2Q15527 256 aaPredicted RBP7.4□□□□□ -1.22
ATG4A-201ENST00000343524 EIPR1Q53HC9 387 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 FAM46CQ5VWP2 391 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 ZNF585AQ6P3V2 769 aa7.4□□□□□ -1.22
ATG4A-201ENST00000343524 ASCL5Q7RTU5 278 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms