RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 AKR7A3O95154 331 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 KLF8O95600 359 aaPredicted RBP20.28■□□□□ 0.84
TRIM28-202ENST00000341753 HOXB2P14652 356 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 MGMTP16455 207 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 GPR143P51810 404 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 C2orf76Q3KRA6 126 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 CLVS2Q5SYC1 327 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 LIN54Q6MZP7 749 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 TMEM205Q6UW68 189 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 PLPP7Q8NBV4 271 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 PATE1Q8WXA2 126 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 FAM3CQ92520 227 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 SLC7A5P2Q9GIP4 190 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 TAS2R8Q9NYW2 309 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 ZNF175Q9Y473 711 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 LOC100509620A0A075B734 347 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 TMEM82A0PJX8 343 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 CSTAP01040 98 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 CSF2RBP32927 897 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 CTXN1P60606 82 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 GABRG1Q8N1C3 465 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 CLEC1AQ8NC01 280 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 RELTQ969Z4 430 aa20.28■□□□□ 0.84
TRIM28-202ENST00000341753 ANKRD9Q96BM1 317 aaPredicted RBP20.28■□□□□ 0.84
TRIM28-202ENST00000341753 URADA6NGE7 173 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 UBBP0CG47 229 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 UBCP0CG48 685 aaKnown RBP20.27■□□□□ 0.84
TRIM28-202ENST00000341753 CCKBRP32239 447 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 RPS27AP62979 156 aaKnown RBP20.27■□□□□ 0.84
TRIM28-202ENST00000341753 UBA52P62987 128 aaKnown RBP20.27■□□□□ 0.84
TRIM28-202ENST00000341753 NR0B2Q15466 257 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 ZCCHC12Q6PEW1 402 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 ZNF627Q7L945 461 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 RCBTB1Q8NDN9 531 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 OR2M4Q96R27 311 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 FARSAQ9Y285 508 aaKnown RBP20.27■□□□□ 0.84
TRIM28-202ENST00000341753 CACNA1IQ9P0X4 2223 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 OR5H14A6NHG9 310 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 ELOA3DA6NLF2 546 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-202ENST00000341753 GMFGO60234 142 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 ALOX12BO75342 701 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 RDH16O75452 317 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 CTSBP07858 339 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 NTSR1P30989 418 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 ACTR1BP42025 376 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 CCR4P51679 360 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 ACTR1AP61163 376 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 HYAL1Q12794 435 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 EIF2B5Q13144 721 aaKnown RBP20.27■□□□□ 0.84
TRIM28-202ENST00000341753 MPPED2Q15777 294 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 ELOA3BQ3SY89 546 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 SCGB2B2Q4G0G5 96 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 SLC43A2Q8N370 569 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 CAMKVQ8NCB2 501 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 ELOA3Q8NG57 546 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 CTHRC1Q96CG8 243 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 ELF4Q99607 663 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-202ENST00000341753 VRK1Q99986 396 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-202ENST00000341753 PDCD10Q9BUL8 212 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-202ENST00000341753 SPACA6W5XKT8 324 aa20.27■□□□□ 0.84
TRIM28-202ENST00000341753 IGKV1D-42A0A075B6H8 117 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 WNT11O96014 354 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 ZNF10P21506 573 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-202ENST00000341753 LSSP48449 732 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 CTAG1AP78358 180 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 JMJD6Q6NYC1 403 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-202ENST00000341753 ZNF550Q7Z398 422 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 OR2W3Q7Z3T1 314 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 RERGQ96A58 199 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-202ENST00000341753 FAM3DQ96BQ1 224 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 C3orf49Q96BT1 292 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 COMMD4Q9H0A8 199 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 SLC39A1Q9NY26 324 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 KANTRA0A1W2PQU2 76 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 HCRTR1O43613 425 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 RAB3DO95716 219 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 AMY2AP04746 511 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 CNR1P21554 472 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 PABPC1L2AQ5JQF8 200 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 CA13Q8N1Q1 262 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 ZNF417Q8TAU3 575 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 GPR148Q8TDV2 347 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 TRBV5-7A0A0A0MS05 114 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 DOK2O60496 412 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 UBE2IP63279 158 aaKnown RBP20.26■□□□□ 0.83
TRIM28-202ENST00000341753 NPSR1Q6W5P4 371 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 LYRM4Q9HD34 91 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 HEBP2Q9Y5Z4 205 aa20.26■□□□□ 0.83
TRIM28-202ENST00000341753 ITGB2P05107 769 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 KIR3DL2P43630 455 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 FLI1Q01543 452 aaPredicted RBP20.25■□□□□ 0.83
TRIM28-202ENST00000341753 ZNHIT3Q15649 155 aaPredicted RBP20.25■□□□□ 0.83
TRIM28-202ENST00000341753 SLC35D2Q76EJ3 337 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 TMEM17Q86X19 198 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 ZNF595Q8IYB9 648 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 LHX6Q9UPM6 363 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 SLC22A13Q9Y226 551 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 FAM25EA8MYX2 175 aa20.25■□□□□ 0.83
TRIM28-202ENST00000341753 ZNF28P17035 718 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms