RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 CLDND1Q9NY35 253 aa12.16□□□□□ -0.46
COL2A1-201ENST00000337299 PCYT1BQ9Y5K3 369 aaPredicted RBP12.16□□□□□ -0.46
COL2A1-201ENST00000337299 SMIM6P0DI80 62 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 POLR2GP62487 172 aaKnown RBP eCLIP12.15□□□□□ -0.46
COL2A1-201ENST00000337299 RAP1AP62834 184 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 B4GALNT1Q00973 533 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 TCEAL6Q6IPX3 200 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 LIMS2Q7Z4I7 341 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 CPXM2Q8N436 756 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 ZNF283Q8N7M2 679 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 TERB2Q8NHR7 220 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 EHFQ9NZC4 300 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 GPR55Q9Y2T6 319 aaPredicted RBP12.15□□□□□ -0.46
COL2A1-201ENST00000337299 SLC5A10A0PJK1 596 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 MEGF11A6BM72 1044 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 SLCO2B1O94956 709 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 IL5P05113 134 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 ZNF16P17020 682 aaPredicted RBP12.15□□□□□ -0.46
COL2A1-201ENST00000337299 Q3ZCU0 254 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 SPICQ8N5J4 248 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 NUDCD2Q8WVJ2 157 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 SLC6A18Q96N87 628 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 ETV7Q9Y603 341 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 SIRT4Q9Y6E7 314 aaPredicted RBP12.15□□□□□ -0.46
COL2A1-201ENST00000337299 IGLON5A6NGN9 336 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 SYT7O43581 403 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 ADH5P11766 374 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 HAAOP46952 286 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 PPA1Q15181 289 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 SLC22A25Q6T423 547 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 STAC2Q6ZMT1 411 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 ZNF600Q6ZNG1 722 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 MS4A3Q96HJ5 214 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 OR11A1Q9GZK7 315 aa12.15□□□□□ -0.46
COL2A1-201ENST00000337299 A0A1W2PPH5 198 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 BTBD17A6NE02 478 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 FABP4P15090 132 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 ABCD3P28288 659 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 CTGFP29279 349 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 DCAF12L2Q5VW00 463 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 SCGB1C1Q8TD33 95 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 PNPLA2Q96AD5 504 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 KLF16Q9BXK1 252 aaPredicted RBP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 EXOSC3Q9NQT5 275 aaKnown RBP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 MED9Q9NWA0 146 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 KCNE1BA0A087WTH5 132 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 EIF3GO75821 320 aaKnown RBP eCLIP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 SNU13P55769 128 aaKnown RBP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 RIN1Q13671 783 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 ZNF836Q6ZNA1 936 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 CDRT4Q8N9R6 151 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 OR5D18Q8NGL1 313 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 HHLA2Q9UM44 414 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 CACNA1DQ01668 2161 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 PJVKQ0ZLH3 352 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 UBXN2BQ14CS0 331 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 MEP1BQ16820 701 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 CYB5R2Q6BCY4 276 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 DNM1P34Q6PK57 102 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 RBMS3Q6XE24 437 aaKnown RBP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 CSNK1A1LQ8N752 337 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 MRPS24Q96EL2 167 aaKnown RBP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 PELI2Q9HAT8 420 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 FZD3Q9NPG1 666 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 UQCC1Q9NVA1 299 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 GAB2Q9UQC2 676 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 SHANK3Q9BYB0 1731 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 UBR3Q6ZT12 1888 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 RDH16O75452 317 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 TIMP2P16035 220 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 TRHRP34981 398 aaPredicted RBP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 BDH1Q02338 343 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 LSRQ86X29 649 aaPredicted RBP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 GALNT16Q8N428 558 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 SNIP1Q8TAD8 396 aaKnown RBP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 MIB2Q96AX9 1013 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 PELI1Q96FA3 418 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 TMPRSS5Q9H3S3 457 aa12.14□□□□□ -0.47
COL2A1-201ENST00000337299 ZNF230Q9UIE0 474 aaPredicted RBP12.14□□□□□ -0.47
COL2A1-201ENST00000337299 SHISA3A0PJX4 238 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 HMSDA8MTL9 139 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 CLEC3AO75596 197 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 FGF19O95750 216 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 CPN1P15169 458 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 PRPH2P23942 346 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 PCBP3P57721 371 aaKnown RBP12.13□□□□□ -0.47
COL2A1-201ENST00000337299 HAGHQ16775 308 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 DEFB110Q30KQ9 67 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 ZNF660Q6AZW8 331 aaPredicted RBP12.13□□□□□ -0.47
COL2A1-201ENST00000337299 FAM109BQ6ICB4 259 aaPredicted RBP12.13□□□□□ -0.47
COL2A1-201ENST00000337299 KCNK15Q9H427 330 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 CWH43Q9H720 699 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 MBD1Q9UIS9 605 aaPredicted RBP12.13□□□□□ -0.47
COL2A1-201ENST00000337299 UBE2J1Q9Y385 318 aaPredicted RBP12.13□□□□□ -0.47
COL2A1-201ENST00000337299 DOCK5Q9H7D0 1870 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 MCM3APO60318 1980 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 CABIN1Q9Y6J0 2220 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 SSC5DA1L4H1 1573 aa12.13□□□□□ -0.47
COL2A1-201ENST00000337299 A0A0A6YYC8 382 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms