RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CT45A9P0DMV2 189 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 GABRA1P14867 456 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 RAB3AP20336 220 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 NPR2P20594 1047 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SOX3P41225 446 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 NDUFA5Q16718 116 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 CT45A2Q5DJT8 189 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 CARD17Q5XLA6 110 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 OR13C9Q8NGT0 318 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 NINJ1Q92982 152 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 HAO2Q9NYQ3 351 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 KLHL13Q9P2N7 655 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 PFDN2Q9UHV9 154 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 RCE1Q9Y256 329 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 UGT2A1Q9Y4X1 527 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 IGLV3-12A0A075B6K2 115 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF593O00488 134 aaPredicted RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SLC34A2O95436 690 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 HOXD4P09016 255 aaPredicted RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 RBMXP38159 391 aaKnown RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 HERV-K104P61576 105 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 PRKCDQ05655 676 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 FOXF1Q12946 379 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 AADACL4Q5VUY2 407 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 STEAP2Q8NFT2 490 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SUN5Q8TC36 379 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 GATAD2BQ8WXI9 593 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 MIB2Q96AX9 1013 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SYT3Q9BQG1 590 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 EP400Q96L91 3159 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 OR5H15A6NDH6 313 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 IGF2P01344 180 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 FTH1P19P0C7X4 201 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SFTPCP11686 197 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 PEBP1P30086 187 aaKnown RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 FGF9P31371 208 aaPredicted RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 HTR5AP47898 357 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 RNPS1Q15287 305 aaKnown RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 CEBPEQ15744 281 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 OR2G6Q5TZ20 316 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SLC25A24Q6NUK1 477 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 CBLN3Q6UW01 205 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF627Q7L945 461 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 DGLUCYQ7Z3D6 616 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 Q8N402 240 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 MUL1Q969V5 352 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SNX18Q96RF0 628 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 RGCCQ9H4X1 137 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SLC52A3Q9NQ40 469 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 GLRX2Q9NS18 164 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 ASH2LQ9UBL3 628 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 ADAM18Q9Y3Q7 739 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 PRR33A8MZF0 331 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 FBXO45P0C2W1 286 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 PTBP1P26599 531 aaKnown RBP eCLIP6.23□□□□□ -1.413e-7■■■□□ 17.4
SF3B1-201ENST00000335508 PIGFQ07326 219 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 FAM199XQ6PEV8 388 aaPredicted RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 YRDCQ86U90 279 aaKnown RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 ZFP41Q8N8Y5 198 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 EXD3Q8N9H8 876 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 NKD1Q969G9 470 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 C4orf36Q96KX1 117 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 PHOX2BQ99453 314 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 GAL3ST1Q99999 423 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 WACQ9BTA9 647 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 CCDC86Q9H6F5 360 aaKnown RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 LIN28AQ9H9Z2 209 aaKnown RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 DCDC2BA2VCK2 349 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 H3BMQ9 156 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 WNT11O96014 354 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 ACP1P24666 158 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 OR1C1Q15619 314 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 STX12Q86Y82 276 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 KIF18BQ86Y91 864 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SNX29P2Q8IUI4 249 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 HTRA1Q92743 480 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 TCEAL3Q969E4 200 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 FAM71F1Q96KD3 344 aaPredicted RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 SMURF1Q9HCE7 757 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 TBCCD1Q9NVR7 557 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 CCDC59Q9P031 241 aaKnown RBP6.23□□□□□ -1.41
SF3B1-201ENST00000335508 HS3ST3B1Q9Y662 390 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 KCNE3Q9Y6H6 103 aa6.23□□□□□ -1.41
SF3B1-201ENST00000335508 THSD7BQ9C0I4 1608 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 TRGV5A0A0B4J1U4 118 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 SLC35F4A4IF30 521 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 FAM166BA8MTA8 275 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 SEC14L2O76054 403 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 AKR7A3O95154 331 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 UBL3O95164 117 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 WDPCPO95876 746 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF35P13682 527 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF117Q03924 483 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 ODF4Q2M2E3 257 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 GXYLT1Q4G148 440 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 SLC25A30Q5SVS4 291 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 ETFRF1Q6IPR1 90 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 OR4N2Q8NGD1 307 aa6.22□□□□□ -1.41
SF3B1-201ENST00000335508 PP6455Q8WZ26 134 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms