RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 CMSS1Q9BQ75 279 aaKnown RBP12.49□□□□□ -0.41
SYNE3-201ENST00000334258 ZMAT3Q9HA38 289 aaKnown RBP12.49□□□□□ -0.41
SYNE3-201ENST00000334258 FRRS1LQ9P0K9 344 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 DEC1Q9P2X7 70 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 ATXN7L1Q9ULK2 861 aaPredicted RBP12.49□□□□□ -0.41
SYNE3-201ENST00000334258 ARID1AO14497 2285 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 TRPM6Q9BX84 2022 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 TSFMP43897 325 aaKnown RBP12.49□□□□□ -0.41
SYNE3-201ENST00000334258 EMDP50402 254 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 PPIAP62937 165 aaKnown RBP12.49□□□□□ -0.41
SYNE3-201ENST00000334258 RUNX2Q13950 521 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 IRF4Q15306 451 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 HFEQ30201 348 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 JMJD6Q6NYC1 403 aaPredicted RBP12.49□□□□□ -0.41
SYNE3-201ENST00000334258 ANKRD16Q6P6B7 361 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 GABRG1Q8N1C3 465 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 GTPBP8Q8N3Z3 284 aaPredicted RBP12.49□□□□□ -0.41
SYNE3-201ENST00000334258 CAMKVQ8NCB2 501 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 OR51A4Q8NGJ6 313 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 OR1J2Q8NGS2 313 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 PHOSPHO2Q8TCD6 241 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 SUSD6Q92537 303 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 MTIF3Q9H2K0 278 aaKnown RBP12.49□□□□□ -0.41
SYNE3-201ENST00000334258 DUSP22Q9NRW4 184 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 FBXL21Q9UKT6 434 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 ENTPD2Q9Y5L3 495 aa12.49□□□□□ -0.41
SYNE3-201ENST00000334258 GGTLC2Q14390 218 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 TMEM52BQ4KMG9 183 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 H3F3CQ6NXT2 135 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 KCNRGQ8N5I3 272 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 ZNF417Q8TAU3 575 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 CCDC74AQ96AQ1 378 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 MYEF2Q9P2K5 600 aaKnown RBP12.48□□□□□ -0.41
SYNE3-201ENST00000334258 WDFY3Q8IZQ1 3526 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 OR2W5A6NFC9 320 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 BCL2L11O43521 198 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 OR2F2O95006 317 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 HLA-AP01891 365 aaKnown RBP12.48□□□□□ -0.41
SYNE3-201ENST00000334258 CISD3P0C7P0 127 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 KCNJ3P48549 501 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 OR2F1Q13607 317 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 NKPD1Q17RQ9 610 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 AKIRIN2Q53H80 203 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 LY6G6FQ5SQ64 297 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 TMEM71Q6P5X7 295 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 TMEM205Q6UW68 189 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 PARM1Q6UWI2 310 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 VN1R4Q7Z5H5 301 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 SHISA5Q8N114 240 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 OR6N2Q8NGY6 317 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 WFIKKN2Q8TEU8 576 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 PPP1R1CQ8WVI7 109 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 TMEM231Q9H6L2 316 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 BARX1Q9HBU1 254 aaPredicted RBP12.48□□□□□ -0.41
SYNE3-201ENST00000334258 LAMP5Q9UJQ1 280 aa12.48□□□□□ -0.41
SYNE3-201ENST00000334258 PMS2P1A4D2B8 440 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 C1QTNF3-AMACRE9PGA6 284 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 CDC40O60508 579 aaKnown RBP eCLIP12.47□□□□□ -0.41
SYNE3-201ENST00000334258 GLCEO94923 617 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 RPS4Y1P22090 263 aaKnown RBP12.47□□□□□ -0.41
SYNE3-201ENST00000334258 CCKBRP32239 447 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 C11orf87Q6NUJ2 197 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 KIRREL2Q6UWL6 708 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 DPY19L2P2Q6ZN68 376 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 LRRTM1Q86UE6 522 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 STX12Q86Y82 276 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 CA5BP1Q8WTZ4 195 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 SMARCD2Q92925 531 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 ASB16Q96NS5 453 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 MYADMQ96S97 322 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 MBD2Q9UBB5 411 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 ZNF629Q9UEG4 869 aaPredicted RBP12.47□□□□□ -0.41
SYNE3-201ENST00000334258 MRM2Q9UI43 246 aaKnown RBP12.47□□□□□ -0.41
SYNE3-201ENST00000334258 KCNK7Q9Y2U2 307 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 KLHDC2Q9Y2U9 406 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 SNRNP200O75643 2136 aaKnown RBP12.47□□□□□ -0.41
SYNE3-201ENST00000334258 KCNAB3O43448 404 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 PRICKLE3O43900 615 aaPredicted RBP12.47□□□□□ -0.41
SYNE3-201ENST00000334258 BRINP1O60477 761 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 EIF4E2O60573 245 aaKnown RBP12.47□□□□□ -0.41
SYNE3-201ENST00000334258 EIF1BO60739 113 aaKnown RBP12.47□□□□□ -0.41
SYNE3-201ENST00000334258 PEBP1P30086 187 aaKnown RBP12.47□□□□□ -0.41
SYNE3-201ENST00000334258 EIF1P41567 113 aaKnown RBP12.47□□□□□ -0.41
SYNE3-201ENST00000334258 PRKXP51817 358 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 NUBP1P53384 320 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 ACTBP60709 375 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 ACTG1P63261 375 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 FHL1Q13642 323 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 ULK3Q6PHR2 472 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 GPR148Q8TDV2 347 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 CASTOR1Q8WTX7 329 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 ZBTB8AQ96BR9 441 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 GAREM1Q9H706 876 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 TMEM74BQ9NUR3 256 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 H7C1C5 153 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 CBR1P16152 277 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 GDI1P31150 447 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 ATP1B3P54709 279 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 LCN6P62502 163 aa12.47□□□□□ -0.41
SYNE3-201ENST00000334258 SKP1P63208 163 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms