RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 RNF115Q9Y4L5 304 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 CACNA1DQ01668 2161 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 PRR14LQ5THK1 2151 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 SLC22A23A1A5C7 686 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 ZNF503-AS2A6NEH8 195 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 PLAUP00749 431 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 HLA-HP01893 362 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 IGFBP1P08833 259 aaPredicted RBP13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 CD79AP11912 226 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 APEHP13798 732 aaKnown RBP13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 NOS3P29474 1203 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 SLC25A47Q6Q0C1 308 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 TMEM108Q6UXF1 575 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 ZNF704Q6ZNC4 412 aaPredicted RBP13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 PTCHD4Q6ZW05 846 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 AMIGO2Q86SJ2 522 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 ADCK1Q86TW2 530 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 JAZF1Q86VZ6 243 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 CCDC36Q8IYA8 594 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 SLC22A24Q8N4F4 322 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 OR8D4Q8NGM9 314 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 BDH2Q9BUT1 245 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 DENND2DQ9H6A0 471 aaPredicted RBP13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 ZNF556Q9HAH1 456 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 IL20Q9NYY1 176 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 KIF17Q9P2E2 1029 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 UGT2A1Q9Y4X1 527 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 LRBAP50851 2863 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 ABCD4O14678 606 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 IMPA2O14732 288 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 ARPC3O15145 178 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 FARS2O95363 451 aaKnown RBP13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 OR8G3PP0DMU2 310 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 CD40P25942 277 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 CDAP32320 146 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 COX10Q12887 443 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 ADAM5Q6NVV9 412 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 CD300LDQ6UXZ3 194 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 MDP1Q86V88 176 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 SKA3Q8IX90 412 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 ATG16L2Q8NAA4 619 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 OR4K13Q8NH42 304 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 OR5K1Q8NHB7 308 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 NANOS1Q8WY41 292 aaKnown RBP13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 NRBF2Q96F24 287 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 SH3GL3Q99963 347 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 TSSK6Q9BXA6 273 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 SYT4Q9H2B2 425 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 RERGLQ9H628 205 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 UBTD1Q9HAC8 227 aa13.87□□□□□ -0.19
CCDC28A-201ENST00000332797 A0A1W2PPL8 197 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 H3BN98 237 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 IDH3BO43837 385 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 AHCYL1O43865 530 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 ENTPD5O75356 428 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 TP53P04637 393 aaPredicted RBP13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 ANXA8P13928 327 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 HIST1H1CP16403 213 aaKnown RBP13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 PTAFRP25105 342 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 CDKN2AP42771 156 aaKnown RBP13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 PIGFQ07326 219 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 SPOCK1Q08629 439 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 NPRL3Q12980 569 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 SGCAQ16586 387 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 GSG1Q2KHT4 349 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 SLC36A3Q495N2 470 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 SLC35F1Q5T1Q4 408 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 LEG1Q6P5S2 330 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 KBTBD8Q8NFY9 601 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 TEX47Q8TBZ9 253 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 SLC38A2Q96QD8 506 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 TMEM204Q9BSN7 226 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 SEMA6AQ9H2E6 1030 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 PLEKHF2Q9H8W4 249 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 SEC61A2Q9H9S3 476 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 NOX3Q9HBY0 568 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 ZNF224Q9NZL3 707 aa13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 VSX1Q9NZR4 365 aaPredicted RBP13.86□□□□□ -0.19
CCDC28A-201ENST00000332797 IGHV1-18A0A0C4DH31 117 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 BHLHE40O14503 412 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 UBL3O95164 117 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 RENP00797 406 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 CELA3BP08861 270 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 PATE4P0C8F1 98 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 CBR1P16152 277 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 CTLA4P16410 223 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 ZNF23P17027 643 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 PAX7P23759 505 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 IDH3GP51553 393 aaPredicted RBP13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 MRPS34P82930 218 aaKnown RBP13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 ETFDHQ16134 617 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 ZFP1Q6P2D0 407 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 SLC16A14Q7RTX9 510 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 HIPK1Q86Z02 1210 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 C10orf67Q8IYJ2 551 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 LRRC18Q8N456 261 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 SDR9C7Q8NEX9 313 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 OR2T33Q8NG76 320 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 NABP1Q96AH0 204 aa13.85□□□□□ -0.19
CCDC28A-201ENST00000332797 FOXN4Q96NZ1 517 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms