RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 MRM2Q9UI43 246 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 KLF15Q9UIH9 416 aa12.22□□□□□ -0.45
CCDC88C-201ENST00000331194 C13orf42A0A1B0GVH6 325 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 C5orf52A6NGY3 159 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF860A6NHJ4 632 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 C9JQL5 133 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 DOK2O60496 412 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 NID1P14543 1247 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 CD96P40200 585 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 ID4P47928 161 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 F2RL1P55085 397 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 ZIC1Q15915 447 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 NKAPLQ5M9Q1 402 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 OR10K2Q6IF99 312 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 RPL13AP3Q6NVV1 102 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 PLPP7Q8NBV4 271 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 BHLHE23Q8NDY6 225 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 OR2L5Q8NG80 312 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 ROBO4Q8WZ75 1007 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 ISOC2Q96AB3 205 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 ZBTB8AQ96BR9 441 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 IKZF2Q9UKS7 526 aa12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 CDV3Q9UKY7 258 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-201ENST00000331194 H7C1C5 153 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 SMIM6P0DI80 62 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 EPCAMP16422 314 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 EMDP50402 254 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 RAB5BP61020 215 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 LCN6P62502 163 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 SLC7A9P82251 487 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 STX12Q86Y82 276 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 DMRTC2Q8IXT2 367 aaPredicted RBP12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF619Q8N2I2 560 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 POMGNT2Q8NAT1 580 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 INO80EQ8NBZ0 244 aaPredicted RBP12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 CCDC74AQ96AQ1 378 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 ARRDC3Q96B67 414 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 LINC00615Q96LM1 132 aaPredicted RBP12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 SLC6A7Q99884 636 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 SRA1Q9HD15 236 aaKnown RBP12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 WBP1LQ9NX94 342 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 WNT6Q9Y6F9 365 aa12.21□□□□□ -0.46
CCDC88C-201ENST00000331194 A0A0A6YYC8 382 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 I3L1I5 382 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 LDB3O75112 727 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 UPK3AO75631 287 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 DAOP14920 347 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ABCD3P28288 659 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 PRKXP51817 358 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 PSMD4P55036 377 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 MST1LQ2TV78 715 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 EIPR1Q53HC9 387 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ALG10BQ5I7T1 473 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF227Q86WZ6 799 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ETFBKMTQ8IXQ9 262 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 OR4E2Q8NGC2 313 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ZCCHC10Q8TBK6 192 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 IRF7Q92985 503 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ARL11Q969Q4 196 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 RRNAD1Q96FB5 475 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ADAD1Q96M93 576 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 FOXN4Q96NZ1 517 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 INSM2Q96T92 566 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 MAP3K3Q99759 626 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 OR51M1Q9H341 326 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 SEMA6CQ9H3T2 930 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 TMEM27Q9HBJ8 222 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 OR2S2Q9NQN1 319 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 TAS2R8Q9NYW2 309 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ASH2LQ9UBL3 628 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 SERTAD3Q9UJW9 196 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 VSIG4Q9Y279 399 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ETV7Q9Y603 341 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 VPS13AQ96RL7 3174 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 FITM1A5D6W6 292 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 DCTN6O00399 190 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 FGF16O43320 207 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 EFEMP2O95967 443 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 PCCBP05166 539 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 S100PP25815 95 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 PPP1R1AQ13522 171 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ALKBH1Q13686 389 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 CCINQ13939 588 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF345Q14585 488 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 SLC22A6Q4U2R8 563 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 CYB5R2Q6BCY4 276 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 NRSN1Q8IZ57 195 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 OR13C8Q8NGS7 320 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 PHOSPHO2Q8TCD6 241 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 SEH1LQ96EE3 360 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 PFDN5Q99471 154 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 CST11Q9H112 138 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 TMED7Q9Y3B3 224 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 TBC1D3KA0A087X1G2 549 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 TBC1D3BA6NDS4 549 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 TBC1D3FA6NER0 549 aaPredicted RBP12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 ZNF208O43345 1280 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 IGHV2-70P01814 119 aa12.2□□□□□ -0.46
CCDC88C-201ENST00000331194 CD63P08962 238 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms