RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CCDC88AQ3V6T2 1871 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 IGKV1D-8A0A087WSZ0 117 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 A0A1W2PPE3 182 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 A6NIZ1 184 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 HAS3O00219 553 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 RGS16O15492 202 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 PRKAB2O43741 272 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 RAMP3O60896 148 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 CLDN9O95484 217 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 STAMBPO95630 424 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 KRT14P02533 472 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 GAPDHP04406 335 aaKnown RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 P04436 131 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 POLR2MP0CAP2 368 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 STAG3L3P0CL85 134 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 OR8G3PP0DMU2 310 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 TROVE2P10155 538 aaKnown RBP eCLIP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 ATP1B2P14415 290 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF17P17021 662 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 NPR2P20594 1047 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 ATP6V1B2P21281 511 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 CMA1P23946 247 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 CASQ1P31415 396 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 HNRNPH3P31942 346 aaKnown RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 CASP14P31944 242 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 FDFT1P37268 417 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 DUSP3P51452 185 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 DLX1P56177 255 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 TAS2R19P59542 299 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 RAP1BP61224 184 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 OGDHQ02218 1023 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF763Q0D2J5 394 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 BST2Q10589 180 aaKnown RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 KLRB1Q12918 225 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 IL18Q14116 193 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 VGLL4Q14135 290 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 GK3PQ14409 553 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 MPPED2Q15777 294 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 MICBQ29980 383 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF630Q2M218 657 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF658BQ4V348 819 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 XKR7Q5GH72 579 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 RAET1LQ5VY80 246 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 TIGD3Q6B0B8 471 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 TMIGD1Q6UXZ0 262 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 HSDL2Q6YN16 418 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 BZW1Q7L1Q6 419 aaKnown RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 PRSS41Q7RTY9 318 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 H2BFWTQ7Z2G1 175 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 MKXQ8IYA7 352 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF321PQ8N8H1 164 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 FAM184AQ8NB25 1140 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 FAM83FQ8NEG4 500 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 SDR9C7Q8NEX9 313 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 OR2L3Q8NG85 312 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 OR4K14Q8NGD5 310 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 OR52K1Q8NGK4 314 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 FAM110BQ8TC76 370 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 MYDGFQ969H8 173 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 UBE2E3Q969T4 207 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 MCUR1Q96AQ8 359 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 TM4SF19Q96DZ7 209 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 TIMD4Q96H15 378 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 C12orf42Q96LP6 360 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 CLCC1Q96S66 551 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 MBOAT4Q96T53 435 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 P2RY13Q9BPV8 354 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 BPIFA3Q9BQP9 254 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 C20orf85Q9H1P6 137 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 RBKSQ9H477 322 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 AZI2Q9H6S1 392 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 TMEM185BQ9H7F4 350 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 ANKRA2Q9H9E1 313 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 STAP1Q9ULZ2 295 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 TMCO1Q9UM00 188 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 WNK3Q9BYP7 1800 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 YTHDC2Q9H6S0 1430 aaKnown RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 RGPD8O14715 1765 aaPredicted RBP2.23□□□□□ -2.05
HMGB1-201ENST00000326004 ADAMTSL1Q8N6G6 1762 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 PLEKHH1Q9ULM0 1364 aa2.23□□□□□ -2.05
HMGB1-201ENST00000326004 C4AP0C0L4 1744 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 TRPM7Q96QT4 1865 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 C5P01031 1676 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 LMO7Q8WWI1 1683 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 QRICH2Q9H0J4 1663 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 A0A1B0GUA9 196 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 CCDC182A6NF36 153 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 LOC110117498-PIK3R3F6TDL0 507 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 ATP5LO75964 103 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 DIRAS1O95057 198 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 IGHV4-34P06331 123 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 KLK3P07288 261 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 RALBP11234 206 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 CXCR2P25025 360 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 IL12AP29459 219 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 GNA11P29992 359 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 NUDT1P36639 197 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 DDOSTP39656 456 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 CTRLP40313 264 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 GLP1RP43220 463 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms