RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ZNF816-ZNF321PA0A0X1KG74 233 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 TGM1P22735 817 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 CCR7P32248 378 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF595Q8IYB9 648 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF321PQ8N8H1 164 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 OR14A16Q8NHC5 309 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 OR5M11Q96RB7 305 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 DHRS9Q9BPW9 319 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 ACTR3CQ9C0K3 210 aaPredicted RBP12.81□□□□□ -0.36
CSPG4-201ENST00000308508 ZDHHC11Q9H8X9 412 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM184BQ9Y519 407 aaPredicted RBP12.81□□□□□ -0.36
CSPG4-201ENST00000308508 A0A1W2PPH5 198 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 THNSL2Q86YJ6 484 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 CCDC74BQ96LY2 380 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 PISDQ9UG56 409 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 PADI1Q9ULC6 663 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 C4orf47A7E2U8 309 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 CLDN10P78369 228 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 BAMBIQ13145 260 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 PKDCCQ504Y2 493 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 OR2T2Q6IF00 324 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 PTRH1Q86Y79 214 aaKnown RBP12.81□□□□□ -0.36
CSPG4-201ENST00000308508 OR52E1Q8NGJ3 308 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 OR5D18Q8NGL1 313 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 LYSMD1Q96S90 227 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 CPEB1Q9BZB8 566 aaKnown RBP12.81□□□□□ -0.36
CSPG4-201ENST00000308508 SHARPINQ9H0F6 387 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 AQP7O14520 342 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 KDM4DQ6B0I6 523 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 ASB11Q8WXH4 323 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 DNMT3BQ9UBC3 853 aaKnown RBP12.81□□□□□ -0.36
CSPG4-201ENST00000308508 SERTM2A0A1B0GWG4 89 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 FOXK2Q01167 660 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 CRMP1Q14194 572 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 CHST14Q8NCH0 376 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 TVP23CQ96ET8 276 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 PARP12Q9H0J9 701 aaKnown RBP12.81□□□□□ -0.36
CSPG4-201ENST00000308508 TRAV20A0A0B4J274 112 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 GLB1P16278 677 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 AOAHP28039 575 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 RAB13P51153 203 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 Q1RN00 199 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 ACOT6Q3I5F7 207 aaPredicted RBP12.81□□□□□ -0.36
CSPG4-201ENST00000308508 TIGITQ495A1 244 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 ATOH8Q96SQ7 321 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 SPATA6Q9NWH7 488 aaPredicted RBP12.81□□□□□ -0.36
CSPG4-201ENST00000308508 ASH2LQ9UBL3 628 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 SOX18P35713 384 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF845Q96IR2 970 aaPredicted RBP12.81□□□□□ -0.36
CSPG4-201ENST00000308508 ARHGDIGQ99819 225 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 BARHL1Q9BZE3 327 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 STARD5Q9NSY2 213 aa12.81□□□□□ -0.36
CSPG4-201ENST00000308508 KIR2DS1A0A191URI9 304 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 CTXN2P0C2S0 81 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 MGMTP16455 207 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 KIR2DS4P43632 304 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 KIR2DS1Q14954 304 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 PLPP7Q8NBV4 271 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 CSF3P09919 207 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 MOGAT2Q3SYC2 334 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 SLC35E1Q96K37 410 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 NDFIP1Q9BT67 221 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 TMEM43Q9BTV4 400 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 NUDT9Q9BW91 350 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 NMES1Q9C002 83 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 NXT1Q9UKK6 140 aaKnown RBP12.8□□□□□ -0.36
CSPG4-201ENST00000308508 PSMB6P28072 239 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 PRLHRP49683 370 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 GABREP78334 506 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 OXA1LQ15070 435 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 RIMBP3CA6NJZ7 1639 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 RIMBP3BA6NNM3 1639 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 RIMBP3Q9UFD9 1639 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 SCGB1C2P0DMR2 95 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 CPEP16870 476 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF26P17031 533 aaPredicted RBP12.8□□□□□ -0.36
CSPG4-201ENST00000308508 ENPP1P22413 925 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 RACK1P63244 317 aaKnown RBP12.8□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF485Q8NCK3 441 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 APOOQ9BUR5 198 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 ZMAT3Q9HA38 289 aaKnown RBP12.8□□□□□ -0.36
CSPG4-201ENST00000308508 NUP205Q92621 2012 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 TRAV36DV7A0A075B6V5 113 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 FPR3P25089 353 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 CLDN17P56750 224 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 RUNX3Q13761 415 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 ZNF718Q3SXZ3 478 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 RAB6CQ53S08 254 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 LIPIQ6XZB0 460 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 CPEB2Q7Z5Q1 589 aaKnown RBP12.8□□□□□ -0.36
CSPG4-201ENST00000308508 MDGA1Q8NFP4 955 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 NMNAT3Q96T66 252 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 RIMS4Q9H426 269 aaPredicted RBP12.8□□□□□ -0.36
CSPG4-201ENST00000308508 OR5K3A6NET4 321 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 A6NL46 340 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 E5RGE8 158 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 PRAMEF26H0Y7S4 382 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 AIFM1O95831 613 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 KRTDAPP60985 99 aa12.8□□□□□ -0.36
CSPG4-201ENST00000308508 RPL11P62913 178 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms