RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TMED6Q8WW62 240 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 TCTN2Q96GX1 697 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 SPACA1Q9HBV2 294 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 U3KQ87 197 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 JTBO76095 146 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 CD80P33681 288 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 ZP2Q05996 745 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 KLHDC9Q8NEP7 349 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 APH1BQ8WW43 257 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 ZNF75AQ96N20 296 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 ABHD6Q9BV23 337 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 CGGBP1Q9UFW8 167 aaPredicted RBP15.96■□□□□ 0.15
SYNPO-201ENST00000307662 CBX7O95931 251 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 TGM1P22735 817 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 ZNF133P52736 654 aaPredicted RBP15.96■□□□□ 0.15
SYNPO-201ENST00000307662 IKZF1Q13422 519 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 ZNF750Q32MQ0 723 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 PDZD11Q5EBL8 140 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 GLCCI1Q86VQ1 547 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 GABRG1Q8N1C3 465 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 C15orf54Q8N8G6 183 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 CLEC1AQ8NC01 280 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 RELL2Q8NC24 303 aaPredicted RBP15.96■□□□□ 0.15
SYNPO-201ENST00000307662 HSD17B8Q92506 261 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 OR51B6Q9H340 312 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 MCTS1Q9ULC4 181 aaKnown RBP15.96■□□□□ 0.15
SYNPO-201ENST00000307662 A0A087WUU8 490 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 TRBV11-1A0A0K0K1C0 115 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 MZT1Q08AG7 82 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 SKA3Q8IX90 412 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 ZCCHC4Q9H5U6 513 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 EPHX3Q9H6B9 360 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 SPATA6Q9NWH7 488 aaPredicted RBP15.96■□□□□ 0.15
SYNPO-201ENST00000307662 TAS2R5Q9NYW4 299 aa15.96■□□□□ 0.15
SYNPO-201ENST00000307662 ZC3H12DA2A288 527 aaKnown RBP15.95■□□□□ 0.14
SYNPO-201ENST00000307662 FITM1A5D6W6 292 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 OR5H14A6NHG9 310 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 TSFMP43897 325 aaKnown RBP15.95■□□□□ 0.14
SYNPO-201ENST00000307662 OR13C8Q8NGS7 320 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 PARP12Q9H0J9 701 aaKnown RBP15.95■□□□□ 0.14
SYNPO-201ENST00000307662 FKRPQ9H9S5 495 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 HINT3Q9NQE9 182 aaKnown RBP15.95■□□□□ 0.14
SYNPO-201ENST00000307662 FLVCR2Q9UPI3 526 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 TMED7-TICAM2A0A0A6YYA0 188 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 ARRDC5A6NEK1 342 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 H7C1Q1 480 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 LGALS8O00214 317 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 MAN2B1O00754 1011 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 NME2P1O60361 137 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 SOD1P00441 154 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 H2AFB1P0C5Y9 115 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 POU3F2P20265 443 aaPredicted RBP15.95■□□□□ 0.14
SYNPO-201ENST00000307662 RAB11AP62491 216 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 ACVR1Q04771 509 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 MFAP5Q13361 173 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 RNF212Q495C1 297 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 CCDC190Q86UF4 302 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 OR2L13Q8N349 312 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 CLRN3Q8NCR9 226 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 OR14A16Q8NHC5 309 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 SPHK1Q9NYA1 384 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 TRAPPC2LQ9UL33 140 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 TMED7Q9Y3B3 224 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 CEBPBP17676 345 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 ZNF620Q6ZNG0 422 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 IL22RA1Q8N6P7 574 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 ARV1Q9H2C2 271 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 TMEM231Q9H6L2 316 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 B3GALT5Q9Y2C3 310 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 CHD4Q14839 1912 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 HMGN4O00479 90 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 PLPP1O14494 284 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 CLN5O75503 358 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 MGST1P10620 155 aaKnown RBP15.95■□□□□ 0.14
SYNPO-201ENST00000307662 ARRB2P32121 409 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 TAF9Q16594 264 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 SIGIRRQ6IA17 410 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 ABHD17CQ6PCB6 329 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 TMEM182Q6ZP80 229 aaPredicted RBP15.95■□□□□ 0.14
SYNPO-201ENST00000307662 ANGPTL5Q86XS5 388 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 MISPQ8IVT2 679 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 SLC16A11Q8NCK7 471 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 TNFRSF12AQ9NP84 129 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 TMEM235A6NFC5 223 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 MGMTP16455 207 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 KIR2DL3P43628 341 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 TMEM31Q5JXX7 168 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 SLC16A14Q7RTX9 510 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 ACAD8Q9UKU7 415 aa15.95■□□□□ 0.14
SYNPO-201ENST00000307662 PPP5D1E7EU14 171 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 CYTIPO60759 359 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 UTS2O95399 124 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 PSMB6P28072 239 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 CCSMST1Q4G0I0 132 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 ABHD17BQ5VST6 288 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 DMBX1Q8NFW5 382 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 OR5M8Q8NGP6 311 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 SLC46A1Q96NT5 459 aa15.94■□□□□ 0.14
SYNPO-201ENST00000307662 ELF4Q99607 663 aaPredicted RBP15.94■□□□□ 0.14
SYNPO-201ENST00000307662 CMC2Q9NRP2 79 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms