RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 C19orf47Q8N9M1 422 aaKnown RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 OR2AK2Q8NG84 335 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 C2CD4CQ8TF44 421 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 SMIM4Q8WVI0 70 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 LCORQ96JN0 433 aaPredicted RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 CCNL2Q96S94 520 aaPredicted RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 GCM1Q9NP62 436 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 TMEM30AQ9NV96 361 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 C19orf53Q9UNZ5 99 aaPredicted RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 OR5M10Q6IEU7 315 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 RHOUQ7L0Q8 258 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 ST8SIA2Q92186 375 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 PIGCQ92535 297 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 ZDHHC5Q9C0B5 715 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 LOXHD1Q8IVV2 1947 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 TRAV1-2A0A0B4J238 106 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 ABLIM3O94929 683 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 PGFP49763 221 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 SYT9Q86SS6 491 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 CUTCQ9NTM9 273 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 SERTAD4Q9NUC0 356 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 CGGBP1Q9UFW8 167 aaPredicted RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 NDRG3Q9UGV2 375 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 SLC23A1Q9UHI7 598 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 TRPM3Q9HCF6 1732 aaPredicted RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 OTOL1A6NHN0 477 aaPredicted RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 JTBO76095 146 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 CHRM4P08173 479 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 HIST1H1CP16403 213 aaKnown RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 FGF9P31371 208 aaPredicted RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 UBE2IP63279 158 aaKnown RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 MAT1AQ00266 395 aaKnown RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 AKR1C1Q04828 323 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 CAMK2BQ13554 666 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 GLIPR1L1Q6UWM5 242 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 PRSS42Q7Z5A4 293 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 MRPL43Q8N983 215 aaKnown RBP11.8□□□□□ -0.52
COL3A1-201ENST00000304636 UPRTQ96BW1 309 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 TSSK2Q96PF2 358 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 R3HDMLQ9H3Y0 253 aa11.8□□□□□ -0.52
COL3A1-201ENST00000304636 A0A1W2PR48 441 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 OR7C1O76099 320 aaPredicted RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 PSMB6P28072 239 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 HOXA9P31269 272 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 ZNF133P52736 654 aaPredicted RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 CLINT1Q14677 625 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 FJX1Q86VR8 437 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 LINC00346Q8IVM7 164 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 LGI3Q8N145 548 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 PPP1R35Q8TAP8 253 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 ANKRD9Q96BM1 317 aaPredicted RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 PAPOLGQ9BWT3 736 aaKnown RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 NECAP2Q9NVZ3 263 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 FITM1A5D6W6 292 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 CEBPZOSA8MTT3 80 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 TMPRSS11DO60235 418 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 CD79AP11912 226 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 LAP3P28838 519 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 SSTP61278 116 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 ECH1Q13011 328 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 TMEM41BQ5BJD5 291 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 ANGPTL5Q86XS5 388 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 CLRN3Q8NCR9 226 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 PSMF1Q92530 271 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 CYSLTR2Q9NS75 346 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 DNMT3BQ9UBC3 853 aaKnown RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 CCL26Q9Y258 94 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 RREB1Q92766 1687 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 C17orf112F2Z3M2 114 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 STMND1H3BQB6 276 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 CTNSO60931 367 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 TIMP1P01033 207 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 CBR1P16152 277 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 YPEL5P62699 121 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 SRYQ05066 204 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 SFRP5Q5T4F7 317 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 TAAR8Q969N4 342 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 BORCS7Q96B45 105 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 POMT2Q9UKY4 750 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 A0A087WZY1 265 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 ITGB8P26012 769 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 EMC4Q5J8M3 183 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 OGFOD3Q6PK18 319 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 CAMKMTQ7Z624 323 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 NLGN4YQ8NFZ3 816 aaPredicted RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 AUNIPQ9H7T9 357 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 SLC39A9Q9NUM3 307 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 SIRT5Q9NXA8 310 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 NTNG1Q9Y2I2 539 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 TRBV11-1A0A0K0K1C0 115 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 A8MVM7 634 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 BET1O15155 118 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 DOK2O60496 412 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 ZFAND5O76080 213 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 ETHE1O95571 254 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 OR4E1P0C645 316 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 MSX1P28360 303 aa11.79□□□□□ -0.52
COL3A1-201ENST00000304636 EEF1A1P68104 462 aaKnown RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 SMAD2Q15796 467 aaKnown RBP11.79□□□□□ -0.52
COL3A1-201ENST00000304636 ZNF684Q5T5D7 378 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms