RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 NUDT15Q9NV35 164 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 C19orf25Q9UFG5 118 aaPredicted RBP21.55■■□□□ 1.04
TRIM54-201ENST00000296098 OR5V1Q9UGF6 321 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 NUBP2Q9Y5Y2 271 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 ANXA2P2A6NMY6 339 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 GPR171O14626 319 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 YKT6O15498 198 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 ANXA2P07355 339 aaKnown RBP21.55■■□□□ 1.04
TRIM54-201ENST00000296098 CCKBRP32239 447 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 GLO1Q04760 184 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 ZP4Q12836 540 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 ODF4Q2M2E3 257 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 PHF19Q5T6S3 580 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 LCN10Q6JVE6 187 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 THRSPQ92748 146 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 DDIT4LQ96D03 193 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 SLC26A1Q9H2B4 701 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 GAREM1Q9H706 876 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 ING3Q9NXR8 418 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 PPP4R1LQ9P1A2 415 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 ETV7Q9Y603 341 aa21.55■■□□□ 1.04
TRIM54-201ENST00000296098 TRAV8-7A0A075B6U6 113 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 NPIPA5E9PKD4 350 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 ZNF208O43345 1280 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 ZFAND5O76080 213 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 CFIP05156 583 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 DAP3P51398 398 aaKnown RBP21.54■■□□□ 1.04
TRIM54-201ENST00000296098 ROM1Q03395 351 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 KLF9Q13886 244 aaPredicted RBP21.54■■□□□ 1.04
TRIM54-201ENST00000296098 BCL2L15Q5TBC7 163 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 TMEM205Q6UW68 189 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 TMPRSS12Q86WS5 348 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 OR51A4Q8NGJ6 313 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 SYNPRQ8TBG9 265 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 RNF128Q8TEB7 428 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 TSEN15Q8WW01 171 aaKnown RBP21.54■■□□□ 1.04
TRIM54-201ENST00000296098 ASB10Q8WXI3 467 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 ULBP3Q9BZM4 244 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 COPZ2Q9P299 210 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 NPIPA1Q9UND3 350 aa21.54■■□□□ 1.04
TRIM54-201ENST00000296098 ASCC3Q8N3C0 2202 aaKnown RBP21.54■■□□□ 1.04
TRIM54-201ENST00000296098 MS4A18H0YCH9 400 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 DHFRP00374 187 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 RAB40ALP0C0E4 278 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 RCVRNP35243 200 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 GDNFP39905 211 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 CCR9P51686 369 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 CDK10Q15131 360 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 MS4A18Q3C1V0 323 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 TMEM53Q6P2H8 277 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 KCTD18Q6PI47 426 aaPredicted RBP21.53■■□□□ 1.04
TRIM54-201ENST00000296098 H1FNTQ75WM6 255 aaPredicted RBP21.53■■□□□ 1.04
TRIM54-201ENST00000296098 KRT77Q7Z794 578 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 KDM8Q8N371 416 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 DNAAF1Q8NEP3 725 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 IFI44Q8TCB0 444 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 RAB40AQ8WXH6 277 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 EDAQ92838 391 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 OCIAD1Q9NX40 245 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 HRH3Q9Y5N1 445 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 TRAV6A0A075B6T7 132 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 CENPBD1B2RD01 187 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 MAS1P04201 325 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 TCRBP04435 133 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 ZNF41P51814 821 aaPredicted RBP21.53■■□□□ 1.04
TRIM54-201ENST00000296098 DYRK1AQ13627 763 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 EIF2B1Q14232 305 aaKnown RBP21.53■■□□□ 1.04
TRIM54-201ENST00000296098 FAM69BQ5VUD6 431 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 MTFR2Q6P444 385 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 MAFAQ8NHW3 353 aaPredicted RBP21.53■■□□□ 1.04
TRIM54-201ENST00000296098 S100A16Q96FQ6 103 aaKnown RBP21.53■■□□□ 1.04
TRIM54-201ENST00000296098 PLEKHA1Q9HB21 404 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 CHST11Q9NPF2 352 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 PAQR5Q9NXK6 330 aaPredicted RBP21.53■■□□□ 1.04
TRIM54-201ENST00000296098 MYOTQ9UBF9 498 aa21.53■■□□□ 1.04
TRIM54-201ENST00000296098 TRABD2BA6NFA1 517 aa21.52■■□□□ 1.04
TRIM54-201ENST00000296098 H3BSH0 61 aa21.52■■□□□ 1.04
TRIM54-201ENST00000296098 GIFP27352 417 aa21.52■■□□□ 1.04
TRIM54-201ENST00000296098 SLC22A10Q63ZE4 541 aa21.52■■□□□ 1.04
TRIM54-201ENST00000296098 DNM1P34Q6PK57 102 aa21.52■■□□□ 1.04
TRIM54-201ENST00000296098 DND1Q8IYX4 353 aaKnown RBP21.52■■□□□ 1.04
TRIM54-201ENST00000296098 ZNF454Q8N9F8 522 aa21.52■■□□□ 1.04
TRIM54-201ENST00000296098 PRDM6Q9NQX0 595 aa21.52■■□□□ 1.04
TRIM54-201ENST00000296098 AKAP7Q9P0M2 348 aaPredicted RBP21.52■■□□□ 1.04
TRIM54-201ENST00000296098 FOXJ3Q9UPW0 622 aa21.52■■□□□ 1.04
TRIM54-201ENST00000296098 COA3Q9Y2R0 106 aaPredicted RBP21.52■■□□□ 1.04
TRIM54-201ENST00000296098 A0A0A6YYJ9 748 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 MEN1O00255 615 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 ETV2O00321 342 aaPredicted RBP21.51■■□□□ 1.03
TRIM54-201ENST00000296098 TDGF1P13385 188 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 IFNGR1P15260 489 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 MSX1P28360 303 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 TLE3Q04726 772 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 TEX30Q5JUR7 227 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 STPG1Q5TH74 334 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 LYPD8Q6UX82 237 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 ZNF227Q86WZ6 799 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 SERPINA12Q8IW75 414 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 SLC22A8Q8TCC7 542 aa21.51■■□□□ 1.03
TRIM54-201ENST00000296098 MCHR2Q969V1 340 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms