RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 OR1J2Q8NGS2 313 aa10.93□□□□□ -0.66
CD44-203ENST00000278386 OR51F2Q8NH61 342 aa10.93□□□□□ -0.66
CD44-203ENST00000278386 PFN4Q8NHR9 129 aa10.93□□□□□ -0.66
CD44-203ENST00000278386 SYNPRQ8TBG9 265 aa10.93□□□□□ -0.66
CD44-203ENST00000278386 TMEM186Q96B77 213 aa10.93□□□□□ -0.66
CD44-203ENST00000278386 TSPAN32Q96QS1 320 aa10.93□□□□□ -0.66
CD44-203ENST00000278386 LRMDAQ9H2I8 198 aa10.93□□□□□ -0.66
CD44-203ENST00000278386 KAT8Q9H7Z6 458 aaKnown RBP10.93□□□□□ -0.66
CD44-203ENST00000278386 HIF1ANQ9NWT6 349 aa10.93□□□□□ -0.66
CD44-203ENST00000278386 TREM2Q9NZC2 230 aa10.93□□□□□ -0.66
CD44-203ENST00000278386 A0A0G2JND7 137 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 C17orf100A8MU93 164 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 WNT9BO14905 357 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 CDC14BO60729 498 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 GAAP10253 952 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 TNFRSF1BP20333 461 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 DRD4P21917 467 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 CCNOP22674 350 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 DAP3P51398 398 aaKnown RBP10.92□□□□□ -0.66
CD44-203ENST00000278386 UGT2B15P54855 530 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 TMEM33P57088 247 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 CCL8P80075 99 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 RPL18Q07020 188 aaKnown RBP10.92□□□□□ -0.66
CD44-203ENST00000278386 SCGB2A2Q13296 93 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 VMACQ2NL98 169 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 AVPI1Q5T686 147 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 STON2Q8WXE9 905 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 ASB10Q8WXI3 467 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 C11orf40Q8WZ69 217 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 MCHR2Q969V1 340 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 MAGEB18Q96M61 343 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 LRRC37BQ96QE4 947 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 PRSS27Q9BQR3 290 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 ZNF426Q9BUY5 554 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 BCL2L14Q9BZR8 327 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 PCDHAC1Q9H158 963 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 KCNN2Q9H2S1 579 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 CCNB1IP1Q9NPC3 277 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 MEPEQ9NQ76 525 aaPredicted RBP10.92□□□□□ -0.66
CD44-203ENST00000278386 HINT3Q9NQE9 182 aaKnown RBP10.92□□□□□ -0.66
CD44-203ENST00000278386 SH3GLB1Q9Y371 365 aa10.92□□□□□ -0.66
CD44-203ENST00000278386 SHOX2O60902 331 aaPredicted RBP10.91□□□□□ -0.66
CD44-203ENST00000278386 RP2O75695 350 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 RGS9O75916 674 aaPredicted RBP10.91□□□□□ -0.66
CD44-203ENST00000278386 OR7A10O76100 309 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 SLC2A10O95528 541 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 SNAP29O95721 258 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 MT-ND1P03886 318 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 MT-ND5P03915 603 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 RAD52P43351 418 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 MRPS11P82912 194 aaKnown RBP10.91□□□□□ -0.66
CD44-203ENST00000278386 MVKQ03426 396 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 RUNX1T1Q06455 604 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 CD47Q08722 323 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 TOP3AQ13472 1001 aaPredicted RBP10.91□□□□□ -0.66
CD44-203ENST00000278386 PCGF3Q3KNV8 242 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 NKAIN4Q8IVV8 208 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.91□□□□□ -0.66
CD44-203ENST00000278386 ZNF519Q8TB69 540 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 TSPEARQ8WU66 669 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 TMEM255BQ8WV15 326 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 SGTBQ96EQ0 304 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 RACGAP1Q9H0H5 632 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 INIPQ9NRY2 104 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 DECR2Q9NUI1 292 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 SLCO1C1Q9NYB5 712 aa10.91□□□□□ -0.66
CD44-203ENST00000278386 STX18Q9P2W9 335 aaKnown RBP10.91□□□□□ -0.66
CD44-203ENST00000278386 WNK2Q9Y3S1 2297 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 DYSFO75923 2080 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 IGLV3-9A0A075B6K5 115 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 TRAV20A0A0B4J274 112 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 HMGB1P1B2RPK0 211 aaPredicted RBP10.9□□□□□ -0.66
CD44-203ENST00000278386 CLDN25C9JDP6 229 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 TRMUO75648 421 aaKnown RBP10.9□□□□□ -0.66
CD44-203ENST00000278386 PNPP00491 289 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 ZNF250P15622 560 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 ACADSP16219 412 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 FUT1P19526 365 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 AQP2P41181 271 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 RBM34P42696 430 aaKnown RBP10.9□□□□□ -0.66
CD44-203ENST00000278386 CRYBA2P53672 197 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 UCP2P55851 309 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 TEKQ02763 1124 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 CYLC2Q14093 348 aaPredicted RBP10.9□□□□□ -0.66
CD44-203ENST00000278386 TSTQ16762 297 aaKnown RBP10.9□□□□□ -0.66
CD44-203ENST00000278386 MMEL1Q495T6 779 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 NRN1LQ496H8 165 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 LRRC23Q53EV4 343 aaPredicted RBP10.9□□□□□ -0.66
CD44-203ENST00000278386 RABL3Q5HYI8 236 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 PABPC1L2AQ5JQF8 200 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 SPATA46Q5T0L3 261 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 C12orf54Q6X4T0 127 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 USP51Q70EK9 711 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 CCDC80Q76M96 950 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 MEX3DQ86XN8 651 aaKnown RBP10.9□□□□□ -0.66
CD44-203ENST00000278386 OR1J1Q8NGS3 322 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 TMEM239Q8WW34 195 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 NSMAFQ92636 917 aa10.9□□□□□ -0.66
CD44-203ENST00000278386 GTF3AQ92664 365 aaKnown RBP10.9□□□□□ -0.66
CD44-203ENST00000278386 RAB39BQ96DA2 213 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms