RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 EPHA1P21709 976 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 IGFBP5P24593 272 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 THBS2P35442 1172 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 RBM34P42696 430 aaKnown RBP8.36□□□□□ -1.07
VPS41-201ENST00000265745 ARFIP2P53365 341 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 TAS2R41P59536 307 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 RPL18Q07020 188 aaKnown RBP8.36□□□□□ -1.07
VPS41-201ENST00000265745 PIN1Q13526 163 aaPredicted RBP8.36□□□□□ -1.07
VPS41-201ENST00000265745 MELKQ14680 651 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 NRN1LQ496H8 165 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 FAM120AOSQ5T036 256 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 GKAP1Q5VSY0 366 aaPredicted RBP8.36□□□□□ -1.07
VPS41-201ENST00000265745 REP15Q6BDI9 236 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 ERICH5Q6P6B1 374 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 NANOGNBQ7Z5D8 188 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 DPPA2Q7Z7J5 298 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 LRP11Q86VZ4 500 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 NKAIN4Q8IVV8 208 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 TMEM255BQ8WV15 326 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 LIPHQ8WWY8 451 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 TMEM158Q8WZ71 300 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 MCHR2Q969V1 340 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 ZNF347Q96SE7 839 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 SH3GL3Q99963 347 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 SYT3Q9BQG1 590 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 SOX7Q9BT81 388 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 POLR2J2Q9GZM3 115 aaKnown RBP8.36□□□□□ -1.07
VPS41-201ENST00000265745 POLR2J3Q9H1A7 115 aaKnown RBP8.36□□□□□ -1.07
VPS41-201ENST00000265745 MS4A5Q9H3V2 200 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 C20orf141Q9NUB4 165 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 KCNS2Q9ULS6 477 aa8.36□□□□□ -1.07
VPS41-201ENST00000265745 POLR3KQ9Y2Y1 108 aaPredicted RBP8.36□□□□□ -1.07
VPS41-201ENST00000265745 ARFGEF3Q5TH69 2177 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 HEATR1Q9H583 2144 aaKnown RBP8.35□□□□□ -1.07
VPS41-201ENST00000265745 A0A1W2PRG6 482 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 BBIP1A8MTZ0 92 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 ADARB2-AS1A8MUL3 147 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 CENPBD1B2RD01 187 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 LYNX1G3V0Z9 82 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 M0R233 179 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 PHF1O43189 567 aaPredicted RBP8.35□□□□□ -1.07
VPS41-201ENST00000265745 OR7A10O76100 309 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 FARS2O95363 451 aaKnown RBP8.35□□□□□ -1.07
VPS41-201ENST00000265745 IGHG1P01857 330 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 F13BP05160 661 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 VIMP08670 466 aaKnown RBP8.35□□□□□ -1.07
VPS41-201ENST00000265745 TSPAN19P0C672 248 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 LYNX1P0DP58 116 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 THRBP10828 461 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 TCN1P20061 433 aaPredicted RBP8.35□□□□□ -1.07
VPS41-201ENST00000265745 KDELR2P33947 212 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 AQP2P41181 271 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 ALDH3B1P43353 468 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 OR1E2P47887 323 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 ZNF133P52736 654 aaPredicted RBP8.35□□□□□ -1.07
VPS41-201ENST00000265745 CHN2P52757 468 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 SEC24CP53992 1094 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 UGT2B15P54855 530 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 RPS23P62266 143 aaKnown RBP8.35□□□□□ -1.07
VPS41-201ENST00000265745 GALK2Q01415 458 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 SF3A3Q12874 501 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS41-201ENST00000265745 LAPTM4AQ15012 233 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 MAPRE2Q15555 327 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 CYBRD1Q53TN4 286 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 CGB2Q6NT52 195 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 DEF8Q6ZN54 512 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 PHC2Q8IXK0 858 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 PAQR4Q8N4S7 273 aaPredicted RBP8.35□□□□□ -1.07
VPS41-201ENST00000265745 SYT14Q8NB59 555 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 PCYOX1LQ8NBM8 494 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 SLC30A7Q8NEW0 376 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 OR4K5Q8NGD3 323 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 PFN4Q8NHR9 129 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 TMEM239Q8WW34 195 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 SGTBQ96EQ0 304 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 TPK1Q9H3S4 243 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 CHODLQ9H9P2 273 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 INIPQ9NRY2 104 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 GID8Q9NWU2 228 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 FRRS1LQ9P0K9 344 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 MYEF2Q9P2K5 600 aaKnown RBP8.35□□□□□ -1.07
VPS41-201ENST00000265745 SLC7A8Q9UHI5 535 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 DUSP13Q9UII6 198 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 MXRA5Q9NR99 2828 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 CR1P17927 2039 aa8.35□□□□□ -1.07
VPS41-201ENST00000265745 FBN3Q75N90 2809 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 MGRN1O60291 552 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 TRMUO75648 421 aaKnown RBP8.34□□□□□ -1.07
VPS41-201ENST00000265745 HPXP02790 462 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 GSTP1P09211 210 aaKnown RBP8.34□□□□□ -1.07
VPS41-201ENST00000265745 CCL2P13500 99 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 ACADSP16219 412 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 SRD5A1P18405 259 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 COL8A2P25067 703 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 IL2RGP31785 369 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 LSP1P33241 339 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 CLRN1P58418 232 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 SELENOWP63302 87 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 MYBPC1Q00872 1141 aa8.34□□□□□ -1.07
VPS41-201ENST00000265745 MAD2L1BPQ15013 274 aaPredicted RBP8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms