RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TPOP07202 933 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 HOXA10P31260 410 aaPredicted RBP12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 BCL6P41182 706 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 PLK5Q496M5 336 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 BRI3BPQ8WY22 251 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 AQP9O43315 295 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 DEDDO75618 318 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 C1orf61Q13536 156 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 CD276Q5ZPR3 534 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 FAM174AQ8TBP5 190 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 SLC35A4Q96G79 324 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 FER1L6-AS2Q96M78 137 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 SLC22A12Q96S37 553 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 POLDIP2Q9Y2S7 368 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 HRH3Q9Y5N1 445 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 LMTK2Q8IWU2 1503 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 LOC102724200A0A096LPH7 203 aaPredicted RBP12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 SH2D1BO14796 132 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 CRYBA1P05813 215 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 MTNR1BP49286 362 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 Q499Y3 187 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 MANEAQ5SRI9 462 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 CLDN22Q8N7P3 220 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 TMEM178AQ8NBL3 297 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 LGALS14Q8TCE9 139 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 TAS2R5Q9NYW4 299 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 PADI1Q9ULC6 663 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 FDXRP22570 491 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 PTBP1P26599 531 aaKnown RBP eCLIP12.9□□□□□ -0.349e-17■■□□□ 12.1
CCDC88A-201ENST00000263630 ZNF485Q8NCK3 441 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 OR2J1Q9GZK6 312 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 SLC2A9Q9NRM0 540 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 NAV1Q8NEY1 1877 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 EDDM3AQ14507 147 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 AAED1Q7RTV5 226 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 SYT9Q86SS6 491 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 MTMR14Q8NCE2 650 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 TMEM230Q96A57 120 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 SMIM7Q9BQ49 75 aa12.9□□□□□ -0.34
CCDC88A-201ENST00000263630 ZNF814B7Z6K7 855 aa12.9□□□□□ -0.35
CCDC88A-201ENST00000263630 SIX6O95475 246 aa12.9□□□□□ -0.35
CCDC88A-201ENST00000263630 F7P08709 466 aaPredicted RBP12.9□□□□□ -0.35
CCDC88A-201ENST00000263630 AKR1C3P42330 323 aa12.9□□□□□ -0.35
CCDC88A-201ENST00000263630 CDKN2DP55273 166 aa12.9□□□□□ -0.35
CCDC88A-201ENST00000263630 C17orf67Q0P5P2 114 aa12.9□□□□□ -0.35
CCDC88A-201ENST00000263630 SMAGPQ0VAQ4 97 aa12.9□□□□□ -0.35
CCDC88A-201ENST00000263630 GJC3Q8NFK1 279 aa12.9□□□□□ -0.35
CCDC88A-201ENST00000263630 NPY6RQ99463 290 aa12.9□□□□□ -0.35
CCDC88A-201ENST00000263630 IL37Q9NZH6 218 aa12.9□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF320A2RRD8 509 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 CLDN17P56750 224 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 OR8G1Q15617 311 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 C6orf132Q5T0Z8 1188 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 IRF2BP1Q8IU81 584 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 GPR26Q8NDV2 337 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 C12orf57Q99622 126 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 SLC5A10A0PJK1 596 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 CNMDO75829 334 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF595Q8IYB9 648 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 OR1J1Q8NGS3 322 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 UTP4Q969X6 686 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 WDR83Q9BRX9 315 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 RTL8AQ9BWD3 113 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 OCEL1Q9H607 264 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 NFAT5O94916 1531 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 A0A0G2JLL6 359 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 SLC6A11P48066 632 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 SFXN4Q6P4A7 337 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 RANBP10Q6VN20 620 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 PRRT2Q7Z6L0 340 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 OR5A2Q8NGI9 324 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 RHBDD1Q8TEB9 315 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 CXorf58Q96LI9 332 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 A0A1B0GTQ1 180 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 NME2P1O60361 137 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 VASH2Q86V25 355 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 C4orf32Q8N8J7 132 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 ACOT4Q8N9L9 421 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 SCAMP4Q969E2 229 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 SIGLEC10Q96LC7 697 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 COMMD5Q9GZQ3 224 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 TRIM77I1YAP6 450 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 RRP8O43159 456 aaKnown RBP12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 ETFDHQ16134 617 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 TOR2AQ5JU69 321 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 C2CD4CQ8TF44 421 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF256Q9Y2P7 627 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 PTGDR2Q9Y5Y4 395 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 SPCS3P61009 180 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 SIRPAP78324 504 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 OR4D1Q15615 310 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 OR4F15Q8NGB8 312 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 SLC25A6P12236 298 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 IL17FQ96PD4 163 aa12.89□□□□□ -0.35
CCDC88A-201ENST00000263630 ZNF716A6NP11 495 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 CHRM2P08172 466 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 ULBP3Q9BZM4 244 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 NSG2Q9Y328 171 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 DLG5Q8TDM6 1919 aa12.88□□□□□ -0.35
CCDC88A-201ENST00000263630 FFAR4Q5NUL3 377 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms