RNA–Protein interactions for RNA: ENST00000261726.10

CUX2-201, Transcript of cut like homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUX2, Length 6,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-201ENST00000261726 CPXM2Q8N436 756 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 BANF2Q9H503 90 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 EXOSC3Q9NQT5 275 aaKnown RBP13.17□□□□□ -0.3
CUX2-201ENST00000261726 ACSS1Q9NUB1 689 aaPredicted RBP13.17□□□□□ -0.3
CUX2-201ENST00000261726 QPCTLQ9NXS2 382 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 SPHK1Q9NYA1 384 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 DNMT3BQ9UBC3 853 aaKnown RBP13.17□□□□□ -0.3
CUX2-201ENST00000261726 PPP1R3CQ9UQK1 317 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 GOLT1BQ9Y3E0 138 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 OR5K3A6NET4 321 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 CSO75390 466 aaKnown RBP13.17□□□□□ -0.3
CUX2-201ENST00000261726 LGI1O95970 557 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 ALDOCP09972 364 aaKnown RBP13.17□□□□□ -0.3
CUX2-201ENST00000261726 TREX1Q9NSU2 369 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 TCRBV3S1A0A5B6 114 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 AQP7P3A6NL99 342 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 CCSO14618 274 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 MEP1BQ16820 701 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 NAXDQ8IW45 347 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 GAREM1Q9H706 876 aa13.17□□□□□ -0.3
CUX2-201ENST00000261726 KIR2DL3P43628 341 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 GPR85P60893 370 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 OR2B11Q5JQS5 317 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 FAM78AQ5JUQ0 283 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 OR10R2Q8NGX6 335 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 OR2G3Q8NGZ4 309 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 HLA-CQ95604 372 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 UFSP2Q9NUQ7 469 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 ZNF701M0R085 212 aaPredicted RBP13.16□□□□□ -0.3
CUX2-201ENST00000261726 INHBCP55103 352 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 KIRREL1Q96J84 757 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 RIMS4Q9H426 269 aaPredicted RBP13.16□□□□□ -0.3
CUX2-201ENST00000261726 MED9Q9NWA0 146 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 EXO1Q9UQ84 846 aaKnown RBP13.16□□□□□ -0.3
CUX2-201ENST00000261726 NUMA1Q14980 2115 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 IVDP26440 423 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 SEMA3BQ13214 749 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 PLK5Q496M5 336 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 TMEM200AQ86VY9 491 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 LRRC56Q8IYG6 542 aaPredicted RBP13.16□□□□□ -0.3
CUX2-201ENST00000261726 KDF1Q8NAX2 398 aaPredicted RBP13.16□□□□□ -0.3
CUX2-201ENST00000261726 OR10X1Q8NGY0 326 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 GOT1L1Q8NHS2 421 aaPredicted RBP13.16□□□□□ -0.3
CUX2-201ENST00000261726 NUMBLQ9Y6R0 609 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 FOXK2Q01167 660 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 OR8G1Q15617 311 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 ZCCHC4Q9H5U6 513 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 CGGBP1Q9UFW8 167 aaPredicted RBP13.16□□□□□ -0.3
CUX2-201ENST00000261726 ARL2-SNX15V9GYD0 113 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 CITO14578 2027 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 A0A087WZY1 265 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 KLRC4-KLRK1H3BQV0 150 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 ETV6P41212 452 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 GON7Q9BXV9 100 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 GPR173Q9NS66 373 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 HCSTQ9UBK5 93 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 GFRA2O00451 464 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 GJA4P35212 333 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 SNTB1Q13884 538 aaKnown RBP13.16□□□□□ -0.3
CUX2-201ENST00000261726 CRMP1Q14194 572 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 ZNF511Q8NB15 262 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 CENPOQ9BU64 300 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 PRR14Q9BWN1 585 aa13.16□□□□□ -0.3
CUX2-201ENST00000261726 IGHV3-20A0A0C4DH32 117 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 RAB19A4D1S5 217 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 PRAMEF25A6NGN4 478 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 PRAMEF5Q5TYX0 476 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 PRAMEF6Q5VXH4 476 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 OR5B3Q8NH48 314 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 PINX1Q96BK5 328 aaKnown RBP13.15□□□□□ -0.3
CUX2-201ENST00000261726 FAM3DQ96BQ1 224 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 KIAA1456Q9P272 454 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 LOC100289279A0A1B0GTE1 492 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 CSF3P09919 207 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 PIPP12273 146 aaPredicted RBP13.15□□□□□ -0.3
CUX2-201ENST00000261726 NTF3P20783 257 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 ADRA1AP35348 466 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 SRP9P49458 86 aaKnown RBP13.15□□□□□ -0.3
CUX2-201ENST00000261726 OR1D5P58170 312 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 KCTD11Q693B1 232 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 SLC35E1Q96K37 410 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 TMEM43Q9BTV4 400 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 PLEKHF2Q9H8W4 249 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 EMCNQ9ULC0 261 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 SCN7AQ01118 1682 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 CLDN24A6NM45 220 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 OR2J3O76001 311 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 SUB1P53999 127 aaKnown RBP eCLIP13.15□□□□□ -0.3
CUX2-201ENST00000261726 PRSS45Q7RTY3 260 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 OR10G3Q8NGC4 313 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 TIMD4Q96H15 378 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 SEC22CQ9BRL7 303 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 TAF9BQ9HBM6 251 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 C4orf47A7E2U8 309 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 AKR7A3O95154 331 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 COX20Q5RI15 118 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 OLIG3Q7RTU3 272 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 ANGPTL5Q86XS5 388 aa13.15□□□□□ -0.3
CUX2-201ENST00000261726 THOC3Q96J01 351 aaKnown RBP13.15□□□□□ -0.3
CUX2-201ENST00000261726 LHX3Q9UBR4 397 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms