RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 IL21Q9HBE4 155 aa11.75□□□□□ -0.53
USP40-201ENST00000251722 GPATCH2Q9NW75 528 aa11.75□□□□□ -0.53
USP40-201ENST00000251722 USP22Q9UPT9 525 aa11.75□□□□□ -0.53
USP40-201ENST00000251722 TSPAN11A1L157 253 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 MCRIP1C9JLW8 97 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 TAS2R19P59542 299 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 ASAH1Q13510 395 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 HNF4GQ14541 408 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 NT5CQ8TCD5 201 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 LINC01599Q8WXQ3 324 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 KHSRPQ92945 711 aaKnown RBP eCLIP11.74□□□□□ -0.536e-11■■□□□ 13.4
USP40-201ENST00000251722 KCNJ15Q99712 375 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 SUCNR1Q9BXA5 334 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 DHCR7Q9UBM7 475 aaKnown RBP11.74□□□□□ -0.53
USP40-201ENST00000251722 SLC22A23A1A5C7 686 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 CNOT4O95628 575 aaKnown RBP11.74□□□□□ -0.53
USP40-201ENST00000251722 IL1AP01583 271 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 CD14P08571 375 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 UBE2KP61086 200 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 EXOSC2Q13868 293 aaKnown RBP11.74□□□□□ -0.53
USP40-201ENST00000251722 OR2A2Q6IF42 318 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 SLC16A13Q7RTY0 426 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 SPRED1Q7Z699 444 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 OR1S1Q8NH92 325 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 SLC38A5Q8WUX1 472 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 PTDSS2Q9BVG9 487 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 SGPP1Q9BX95 441 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 ZNF891A8MT65 544 aaPredicted RBP11.74□□□□□ -0.53
USP40-201ENST00000251722 PHOX2AO14813 284 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 SNCAP37840 140 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 CX3CR1P49238 355 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 SNU13P55769 128 aaKnown RBP11.74□□□□□ -0.53
USP40-201ENST00000251722 ERV3-1Q14264 604 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 IL11RAQ14626 422 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 C1orf140Q5VVS0 124 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 NPSR1Q6W5P4 371 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 KCNG3Q8TAE7 436 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 OLIG1Q8TAK6 271 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 EXTL1Q92935 676 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 ZBTB8AQ96BR9 441 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 MUTYHQ9UIF7 546 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 FBXO7Q9Y3I1 522 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 TRBV5-4A0A0C4DH59 114 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 PRRT4C9JH25 899 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 DPM1O60762 260 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 SLC2A1P11166 492 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 EPHA5P54756 1037 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 PKIAP61925 76 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 ILKQ13418 452 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 SLC10A1Q14973 349 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 CMTM3Q96MX0 182 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 CNTNAP3Q9BZ76 1288 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 GPR61Q9BZJ8 451 aa11.74□□□□□ -0.53
USP40-201ENST00000251722 OR6V1Q8N148 313 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 UBAC2Q8NBM4 344 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 OR56B2PQ8NGI1 322 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 OIT3Q8WWZ8 545 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 FYTTD1Q96QD9 318 aaKnown RBP11.73□□□□□ -0.53
USP40-201ENST00000251722 MACROD1Q9BQ69 325 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 PROCRQ9UNN8 238 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 PRAMEF27A3QJZ7 478 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 K7ERU9 68 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 CLEC2LP0C7M8 214 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 GABREP78334 506 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 ZNF691Q5VV52 312 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 TMEM81Q6P7N7 255 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 ZNF813Q6ZN06 617 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 SLC35D2Q76EJ3 337 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 FBXL6Q8N531 539 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 BRIX1Q8TDN6 353 aaKnown RBP11.73□□□□□ -0.53
USP40-201ENST00000251722 PIGCQ92535 297 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 TBC1D29Q9UFV1 150 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 LAMB2P55268 1798 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 SPTY2D1-AS1A0A0U1RR47 76 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 LOC105371267A0A1B0GV96 52 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 ACOD1A6NK06 481 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 ABHD16AO95870 558 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 RAB6AP20340 208 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 LSSP48449 732 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 ZNF133P52736 654 aaPredicted RBP11.73□□□□□ -0.53
USP40-201ENST00000251722 PNLIPRP2P54317 469 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 NDUFAF7Q7L592 441 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 ZNF546Q86UE3 836 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 CYB561A3Q8NBI2 242 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 WFDC5Q8TCV5 224 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 ARRDC1-AS1Q9H2J1 176 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 SLCO5A1Q9H2Y9 848 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 LUZP4Q9P127 313 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 TRAV27A0A087WT01 109 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 LNP1A1A4G5 178 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 RPLP1P05386 114 aaKnown RBP11.73□□□□□ -0.53
USP40-201ENST00000251722 BDKRB2P30411 391 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 SNRPEP62304 92 aaKnown RBP11.73□□□□□ -0.53
USP40-201ENST00000251722 FCN2Q15485 313 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 UBE2NLQ5JXB2 153 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 B3GNT7Q8NFL0 401 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 C11orf40Q8WZ69 217 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 OR51M1Q9H341 326 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 ACKR4Q9NPB9 350 aa11.73□□□□□ -0.53
USP40-201ENST00000251722 WSB2Q9NYS7 404 aaPredicted RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms