RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 COTL1Q14019 142 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 ZNF239Q16600 458 aaKnown RBP13.38□□□□□ -0.27
PTPRA-201ENST00000216877 TMPPEQ6ZT21 453 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 TMEM173Q86WV6 379 aaPredicted RBP13.38□□□□□ -0.27
PTPRA-201ENST00000216877 GALNT16Q8N428 558 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 TMEM104Q8NE00 496 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 NPRL2Q8WTW4 380 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 TSEN15Q8WW01 171 aaKnown RBP13.38□□□□□ -0.27
PTPRA-201ENST00000216877 MIB2Q96AX9 1013 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 TIMP4Q99727 224 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 EFCAB11Q9BUY7 163 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 LHX3Q9UBR4 397 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 OR52A4PA6NMU1 304 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 ZNF587BE7ETH6 402 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 GFYI3L273 518 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 PPM1DO15297 605 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 CTNSO60931 367 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 TMEM244Q5VVB8 128 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 OR2T2Q6IF00 324 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 EIF5AL1Q6IS14 154 aaKnown RBP13.38□□□□□ -0.27
PTPRA-201ENST00000216877 SPNS3Q6ZMD2 512 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 MTSS1LQ765P7 747 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 OR9A1PQ8NGU1 263 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 RNF122Q9H9V4 155 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 C20orf141Q9NUB4 165 aa13.38□□□□□ -0.27
PTPRA-201ENST00000216877 TVP23AA6NH52 213 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 MAN2B1O00754 1011 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 IFNA6P05013 189 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 HOXC4P09017 264 aaPredicted RBP13.37□□□□□ -0.27
PTPRA-201ENST00000216877 HOXB5P09067 269 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 OR8G3PP0DMU2 310 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 HOXA5P20719 270 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 PPP1R1AQ13522 171 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 Q6ZVL8 140 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 RNF44Q7L0R7 432 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 CACUL1Q86Y37 369 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 ADAMTS15Q8TE58 950 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 C15orf40Q8WUR7 153 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 KXD1Q9BQD3 176 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 TMEM106CQ9BVX2 250 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 SLC45A1Q9Y2W3 748 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 ACRP10323 421 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 OR1D2P34982 312 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 LSM6P62312 80 aaKnown RBP13.37□□□□□ -0.27
PTPRA-201ENST00000216877 ACY1Q03154 408 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 SLC9A3R2Q15599 337 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 OTPQ5XKR4 325 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 C17orf64Q86WR6 236 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 PTGES2Q9H7Z7 377 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 ADGRL4Q9HBW9 690 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 KCNG2Q9UJ96 466 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 ALPK3Q96L96 1907 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 NPIPA5A0A0B4J1W7 369 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 NPIPA7E9PJI5 369 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 PPIHO43447 177 aaKnown RBP13.37□□□□□ -0.27
PTPRA-201ENST00000216877 RCBTB2O95199 551 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 AIFM1O95831 613 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 EPPINO95925 133 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 CD74P04233 296 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 NPIPA8P0DM63 369 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 LAMP2P13473 410 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 TEX19Q8NA77 164 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 MRPL37Q9BZE1 423 aaKnown RBP13.37□□□□□ -0.27
PTPRA-201ENST00000216877 CHST5Q9GZS9 411 aa13.37□□□□□ -0.27
PTPRA-201ENST00000216877 SCAF4O95104 1147 aaKnown RBP13.36□□□□□ -0.27
PTPRA-201ENST00000216877 IFNGP01579 166 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 RAB4BP61018 213 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 RASGEF1BQ0VAM2 473 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 GXYLT1Q4G148 440 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 ATPAF1Q5TC12 328 aaPredicted RBP13.36□□□□□ -0.27
PTPRA-201ENST00000216877 RPL7L1Q6DKI1 246 aaKnown RBP13.36□□□□□ -0.27
PTPRA-201ENST00000216877 LCN10Q6JVE6 187 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 TMEM220Q6QAJ8 160 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 STAC2Q6ZMT1 411 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 GALNTL5Q7Z4T8 443 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 TMEM150AQ86TG1 271 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 SLC35F2Q8IXU6 374 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 DND1Q8IYX4 353 aaKnown RBP13.36□□□□□ -0.27
PTPRA-201ENST00000216877 TAF9BQ9HBM6 251 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 FAM212BQ9NTI7 297 aaPredicted RBP13.36□□□□□ -0.27
PTPRA-201ENST00000216877 WIF1Q9Y5W5 379 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 COL4A4P53420 1690 aaPredicted RBP13.36□□□□□ -0.27
PTPRA-201ENST00000216877 MMP7P09237 267 aaPredicted RBP13.36□□□□□ -0.27
PTPRA-201ENST00000216877 ACTC1P68032 377 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 ACTA1P68133 377 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 RHEBQ15382 184 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 DHCR24Q15392 516 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 PHYHIPQ92561 330 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 TCTN2Q96GX1 697 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 NRTNQ99748 197 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 ACTRT3Q9BYD9 372 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 CALML5Q9NZT1 146 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 ST6GALNAC2Q9UJ37 374 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 SLC35A3Q9Y2D2 325 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 GOLT1BQ9Y3E0 138 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 C9orf170A2RU37 121 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 FAM221BA6H8Z2 402 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 MCIDASD6RGH6 385 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 H7BY64 318 aa13.36□□□□□ -0.27
PTPRA-201ENST00000216877 ZGLP1P0C6A0 271 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms