RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 RPS21P63220 83 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 PRR3P79522 188 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 HTD2P86397 168 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OGDHQ02218 1023 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ELP6Q0PNE2 266 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SMARCB1Q12824 385 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 PDIA2Q13087 525 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 ERCC8Q13216 396 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 IL15RAQ13261 267 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SCGB2A2Q13296 93 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 PPIL2Q13356 520 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 PLD1Q13393 1074 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ZNF77Q15935 545 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 KLHL38Q2WGJ6 581 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ZBED5Q49AG3 693 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 RNASE13Q5GAN3 156 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 COA6Q5JTJ3 125 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 PHYHD1Q5SRE7 291 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 HES5Q5TA89 166 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 RIPPLY2Q5TAB7 128 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SAXO2Q658L1 398 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 GALNT17Q6IS24 598 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 HCP5Q6MZN7 132 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 PRMT9Q6P2P2 845 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 DNAJC24Q6P3W2 148 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 TRIM40Q6P9F5 258 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 KCNIP4Q6PIL6 250 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CNSTQ6PJW8 725 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 UQCC3Q6UW78 93 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ENPP6Q6UWR7 440 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 HSDL2Q6YN16 418 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 Q6ZN92 141 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 C16orf47Q6ZP98 133 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 TMEM136Q6ZRR5 245 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 Q6ZSR3 168 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CCDC80Q76M96 950 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ASCL5Q7RTU5 278 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SLC16A13Q7RTY0 426 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 EFL1Q7Z2Z2 1120 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 DHDDSQ86SQ9 333 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ACOT1Q86TX2 421 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 LHFPL3Q86UP9 236 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CALHM3Q86XJ0 350 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 TICAM2Q86XR7 235 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CDKL3Q8IVW4 592 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 ZNF683Q8IZ20 524 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SLC38A6Q8IZM9 456 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 PUSL1Q8N0Z8 303 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 LGI3Q8N145 548 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SLC35G3Q8N808 338 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ACOT4Q8N9L9 421 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 GMCL1P1Q8NEA9 526 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 IPMKQ8NFU5 416 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OR4K5Q8NGD3 323 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OR5D13Q8NGL4 314 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OR2T3Q8NH03 318 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OR8U1Q8NH10 309 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OR4S2Q8NH73 311 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 LINC01560Q8TB33 94 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SYNPRQ8TBG9 265 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 MAGEE2Q8TD90 523 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 KLF14Q8TD94 323 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 ABHD3Q8WU67 409 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 RTN4IP1Q8WWV3 396 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 CTNNBL1Q8WYA6 563 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 EMG1Q92979 244 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 TMEM54Q969K7 222 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 CREB3L1Q96BA8 519 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SEH1LQ96EE3 360 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 L3HYPDHQ96EM0 354 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 DTNBP1Q96EV8 351 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 COQ2Q96H96 371 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OR8B4Q96RC9 309 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SORT1Q99523 831 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 DOK1Q99704 481 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 TIMM29Q9BSF4 260 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 TCHPQ9BT92 498 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OSBPL10Q9BXB5 764 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ZNF717Q9BY31 904 aaPredicted RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 ANGPTL4Q9BY76 406 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 PARD6BQ9BYG5 372 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 RAB33BQ9H082 229 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 OR52D1Q9H346 318 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 DHX35Q9H5Z1 703 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 AZI2Q9H6S1 392 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 SYNDIG1Q9H7V2 258 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 NIPAL2Q9H841 368 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 COQ10BQ9H8M1 238 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 HMG20AQ9NP66 347 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ADAP2Q9NPF8 381 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ISYNA1Q9NPH2 558 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 EXD2Q9NVH0 621 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 THUMPD1Q9NXG2 353 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 TAS2R3Q9NYW6 316 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 KCNIP1Q9NZI2 227 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ACTR3BQ9P1U1 418 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 DHCR7Q9UBM7 475 aaKnown RBP0.12□□□□□ -2.39
VPS35-212ENST00000640313 MOSPD1Q9UJG1 213 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 ZNF391Q9UJN7 358 aa0.12□□□□□ -2.39
VPS35-212ENST00000640313 MMP17Q9ULZ9 603 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms