RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RACGAP1Q9H0H5 632 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 RNF121Q9H920 327 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 TMEM38BQ9NVV0 291 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 SLC7A8Q9UHI5 535 aa13.83□□□□□ -0.2
CLN3-246ENST00000636228 DHHO43323 396 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 FMO6PO60774 539 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 QDPRP09417 244 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 OR8G3PP0DMU2 310 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 GAAP10253 952 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 UMPSP11172 480 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 LSP1P33241 339 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 LMO4P61968 165 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 RPS23P62266 143 aaKnown RBP13.82□□□□□ -0.2
CLN3-246ENST00000636228 CCL8P80075 99 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 MYBPC1Q00872 1141 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 RUNX1T1Q06455 604 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 ZP4Q12836 540 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 AVPI1Q5T686 147 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 RGS7BPQ6MZT1 257 aaPredicted RBP13.82□□□□□ -0.2
CLN3-246ENST00000636228 FAHD2BQ6P2I3 314 aaPredicted RBP13.82□□□□□ -0.2
CLN3-246ENST00000636228 UGT2A3Q6UWM9 527 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 DHDDSQ86SQ9 333 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 RETREG3Q86VR2 466 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 ADAMTS16Q8TE57 1224 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 GTF3AQ92664 365 aaKnown RBP13.82□□□□□ -0.2
CLN3-246ENST00000636228 TMEM186Q96B77 213 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 FAHD2AQ96GK7 314 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 LRRC37BQ96QE4 947 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 NANSQ9NR45 359 aa13.82□□□□□ -0.2
CLN3-246ENST00000636228 LEF1Q9UJU2 399 aaPredicted RBP13.82□□□□□ -0.2
CLN3-246ENST00000636228 BLOC1S5-TXNDC5H3BN57 136 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 ERLIN1O75477 346 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 RP2O75695 350 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 LCKP06239 509 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 MSMBP08118 114 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 PGA4P0DJD7 388 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 PGA3P0DJD8 388 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 ATP4BP51164 291 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 TMEM33P57088 247 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 MVKQ03426 396 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 ICA1LQ8NDH6 482 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 SLC25A44Q96H78 314 aaPredicted RBP13.81□□□□□ -0.2
CLN3-246ENST00000636228 ZNF347Q96SE7 839 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 CGREF1Q99674 301 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 EVA1AQ9H8M9 152 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 CDH20Q9HBT6 801 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 FBXL3Q9UKT7 428 aa13.81□□□□□ -0.2
CLN3-246ENST00000636228 TRAPPC13A5PLN9 417 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 C17orf100A8MU93 164 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 FARS2O95363 451 aaKnown RBP13.8□□□□□ -0.2
CLN3-246ENST00000636228 BCL10O95999 233 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 HIST1H2ABP04908 130 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 F13BP05160 661 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 CD247P20963 164 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 PCMT1P22061 227 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 GLO1Q04760 184 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 RBBP4Q09028 425 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 AGBL2Q5U5Z8 902 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 REP15Q6BDI9 236 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 TMEM53Q6P2H8 277 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 C12orf54Q6X4T0 127 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 DEF8Q6ZN54 512 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 HIST3H2AQ7L7L0 130 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 SLC16A14Q7RTX9 510 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 MEX3DQ86XN8 651 aaKnown RBP13.8□□□□□ -0.2
CLN3-246ENST00000636228 LRRC18Q8N456 261 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 SYT14Q8NB59 555 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 SYNPRQ8TBG9 265 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 HIST1H2ACQ93077 130 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 MCHR2Q969V1 340 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 TAMM41Q96BW9 452 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 PRSS27Q9BQR3 290 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 MEPEQ9NQ76 525 aaPredicted RBP13.8□□□□□ -0.2
CLN3-246ENST00000636228 HINT3Q9NQE9 182 aaKnown RBP13.8□□□□□ -0.2
CLN3-246ENST00000636228 ZNF229Q9UJW7 825 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 ZNF346Q9UL40 294 aaKnown RBP13.8□□□□□ -0.2
CLN3-246ENST00000636228 NDUFAF1Q9Y375 327 aa13.8□□□□□ -0.2
CLN3-246ENST00000636228 AVPP01185 164 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 TFP02787 698 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 ASAH2BP0C7U1 165 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 TNFRSF1BP20333 461 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 KLF3P57682 345 aaPredicted RBP13.79□□□□□ -0.2
CLN3-246ENST00000636228 CLRN1P58418 232 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 TMEM154Q6P9G4 183 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 SHQ1Q6PI26 577 aaKnown RBP13.79□□□□□ -0.2
CLN3-246ENST00000636228 C1orf229Q6ZS94 237 aaPredicted RBP13.79□□□□□ -0.2
CLN3-246ENST00000636228 NANOGNBQ7Z5D8 188 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 OR51F2Q8NH61 342 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 OR10A6Q8NH74 314 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 PFN4Q8NHR9 129 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 SLC26A7Q8TE54 656 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 ZNF416Q9BWM5 594 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 ZNF385DQ9H6B1 395 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 KAT8Q9H7Z6 458 aaKnown RBP13.79□□□□□ -0.2
CLN3-246ENST00000636228 GRIP1Q9Y3R0 1128 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 CACNG2Q9Y698 323 aa13.79□□□□□ -0.2
CLN3-246ENST00000636228 LOC105371242A0A075B767 164 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 ANGPT2O15123 496 aa13.78□□□□□ -0.2
CLN3-246ENST00000636228 SHOX2O60902 331 aaPredicted RBP13.78□□□□□ -0.2
CLN3-246ENST00000636228 IGHG1P01857 330 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms