RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 RASGEF1BQ0VAM2 473 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 GTF3C1Q12789 2109 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 MRPL49Q13405 166 aaKnown RBP12.87□□□□□ -0.35
LINC00339-208ENST00000634934 C1DQ13901 141 aaKnown RBP12.87□□□□□ -0.35
LINC00339-208ENST00000634934 SMN1Q16637 294 aaKnown RBP12.87□□□□□ -0.35
LINC00339-208ENST00000634934 TIGD6Q17RP2 521 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 CLEC12AQ5QGZ9 265 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 MEDAGQ5VYS4 303 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 Q6ZPB1 254 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-208ENST00000634934 ADGRE4PQ86SQ3 457 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 MCFD2Q8NI22 146 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 RNF128Q8TEB7 428 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 ABHD3Q8WU67 409 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 CALHM2Q9HA72 323 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 ZNF226Q9NYT6 803 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 CLCF1Q9UBD9 225 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 OSGIN2Q9Y236 505 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 PEX16Q9Y5Y5 336 aa12.87□□□□□ -0.35
LINC00339-208ENST00000634934 FASNP49327 2511 aaKnown RBP12.86□□□□□ -0.35
LINC00339-208ENST00000634934 A0A075B6Q4 140 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 BOLA2-SMG1P6H3BVE0 249 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 J3QKU1 62 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 CYTIPO60759 359 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 VAMP5O95183 116 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 HOXD4P09016 255 aaPredicted RBP12.86□□□□□ -0.35
LINC00339-208ENST00000634934 HLA-DOBP13765 273 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 GNLYP22749 145 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 SLC6A6P31641 620 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 LIPAP38571 399 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 FXYD6P3P58550 94 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 CTXN1P60606 82 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 NCS1P62166 190 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 IFITM3Q01628 133 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 POU3F1Q03052 451 aaPredicted RBP12.86□□□□□ -0.35
LINC00339-208ENST00000634934 ZP4Q12836 540 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 SLC25A30Q5SVS4 291 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 NSUN5P2Q63ZY6 315 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 ABLIM2Q6H8Q1 611 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 RTL6Q6ICC9 239 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 RPL13AP3Q6NVV1 102 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 THSD4Q6ZMP0 1018 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 UEVLDQ8IX04 471 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 SLC43A2Q8N370 569 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 OR52L1Q8NGH7 329 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 TEX47Q8TBZ9 253 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 WNT2BQ93097 391 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 ZNF775Q96BV0 537 aaPredicted RBP12.86□□□□□ -0.35
LINC00339-208ENST00000634934 OXGR1Q96P68 337 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 IFT27Q9BW83 186 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 PLA2G12AQ9BZM1 189 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 ENKD1Q9H0I2 346 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 INIPQ9NRY2 104 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 KLHL9Q9P2J3 617 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 CLEC4AQ9UMR7 237 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 FAM215AQ9Y5M1 114 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 ZGRF1Q86YA3 2104 aa12.86□□□□□ -0.35
LINC00339-208ENST00000634934 A0A1W2PNV4 684 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 A0A1W2PRG6 482 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 CD8B2A6NJW9 211 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 MCIDASD6RGH6 385 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 TP53P04637 393 aaPredicted RBP12.85□□□□□ -0.35
LINC00339-208ENST00000634934 LCKP06239 509 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 TSPAN19P0C672 248 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 ZNF43P17038 809 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 ERVK-25P63136 954 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 SLC17A1Q14916 467 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 RNPS1Q15287 305 aaKnown RBP12.85□□□□□ -0.35
LINC00339-208ENST00000634934 EEF1A1P5Q5VTE0 462 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 PXKQ7Z7A4 578 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 RPRMLQ8N4K4 120 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 CLDN22Q8N7P3 220 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 C9orf106Q8NAJ2 232 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 ANKK1Q8NFD2 765 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 OR9K2Q8NGE7 335 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 OR8D4Q8NGM9 314 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 TXNDC15Q96J42 360 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 Q96MT0 163 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 SF3B5Q9BWJ5 86 aaKnown RBP12.85□□□□□ -0.35
LINC00339-208ENST00000634934 TSSK6Q9BXA6 273 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 IL20Q9NYY1 176 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 B3GAT1Q9P2W7 334 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 NOX1Q9Y5S8 564 aa12.85□□□□□ -0.35
LINC00339-208ENST00000634934 PPP1R3DO95685 299 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 RGS6P49758 472 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 CRISP1P54107 249 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 PER3P56645 1201 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 DPY19L2P2Q6ZN68 376 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 BTLAQ7Z6A9 289 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 GCNT2Q8N0V5 402 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 IQCF1Q8N6M8 205 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 LRRC75AQ8NAA5 344 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 GALNT11Q8NCW6 608 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 TM9SF2Q99805 663 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 KATNB1Q9BVA0 655 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 POLDIP3Q9BY77 421 aaKnown RBP12.84□□□□□ -0.35
LINC00339-208ENST00000634934 RNF122Q9H9V4 155 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 SLC25A19Q9HC21 320 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 RASSF1Q9NS23 344 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 IER3IP1Q9Y5U9 82 aa12.84□□□□□ -0.35
LINC00339-208ENST00000634934 LOC102725191A0A1B0GVB3 256 aa12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms