RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CLRN1P58418 232 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 CDK5Q00535 292 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 P2RY6Q15077 328 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 OGFRL1Q5TC84 451 aaPredicted RBP17.36■□□□□ 0.37
UPF3A-211ENST00000618700 STAC2Q6ZMT1 411 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 PTCHD4Q6ZW05 846 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 ABHD12BQ7Z5M8 362 aaPredicted RBP17.36■□□□□ 0.37
UPF3A-211ENST00000618700 GPR137CQ8N3F9 429 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 IQCF1Q8N6M8 205 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 SYT14Q8NB59 555 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 OR6N1Q8NGY5 312 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 GPR35Q9HC97 309 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 ENOPH1Q9UHY7 261 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 USP9YO00507 2555 aaPredicted RBP17.35■□□□□ 0.37
UPF3A-211ENST00000618700 PRSS37A4D1T9 235 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 ZNF587BE7ETH6 402 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 M0R3G1 203 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 XKRYO14609 159 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 ARHGEF9O43307 516 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 AHCYL1O43865 530 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 HIST1H1CP16403 213 aaKnown RBP17.35■□□□□ 0.37
UPF3A-211ENST00000618700 PSMB1P20618 241 aaKnown RBP17.35■□□□□ 0.37
UPF3A-211ENST00000618700 POU1F1P28069 291 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 GRNP28799 593 aaKnown RBP17.35■□□□□ 0.37
UPF3A-211ENST00000618700 MPGP29372 298 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 GRK5P34947 590 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 ROR2Q01974 943 aaKnown RBP17.35■□□□□ 0.37
UPF3A-211ENST00000618700 SLC34A1Q06495 639 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 FAM27E3Q08E93 113 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 LPCAT4Q643R3 524 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 SLC27A4Q6P1M0 643 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 LRFN4Q6PJG9 635 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 CXorf67Q86X51 503 aaPredicted RBP17.35■□□□□ 0.37
UPF3A-211ENST00000618700 ULBP2Q9BZM5 246 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 CRLF2Q9HC73 371 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 B3GAT2Q9NPZ5 323 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 TAS2R16Q9NYV7 291 aa17.35■□□□□ 0.37
UPF3A-211ENST00000618700 VSX1Q9NZR4 365 aaPredicted RBP17.35■□□□□ 0.37
UPF3A-211ENST00000618700 SLC22A23A1A5C7 686 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 ZAR1LA6NP61 321 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 RNF223E7ERA6 249 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 H7C1C5 153 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 KRT33AO76009 404 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 NR2C1P13056 603 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 EPHA2P29317 976 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 NOS3P29474 1203 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 CDKN2AP42771 156 aaKnown RBP17.34■□□□□ 0.37
UPF3A-211ENST00000618700 HCFC1P51610 2035 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 LCN6P62502 163 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 SORDQ00796 357 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 MYBPC1Q00872 1141 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 ITGADQ13349 1161 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 GINS1Q14691 196 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 STK11Q15831 433 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 ZNF362Q5T0B9 420 aaPredicted RBP17.34■□□□□ 0.37
UPF3A-211ENST00000618700 SLC35F1Q5T1Q4 408 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 SFRP5Q5T4F7 317 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 ZNF433Q8N7K0 673 aaPredicted RBP17.34■□□□□ 0.37
UPF3A-211ENST00000618700 FNDC8Q8TC99 324 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 ZNF837Q96EG3 531 aaPredicted RBP17.34■□□□□ 0.37
UPF3A-211ENST00000618700 LRRC46Q96FV0 321 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 SNX18Q96RF0 628 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 C8orf4Q9NR00 106 aa17.34■□□□□ 0.37
UPF3A-211ENST00000618700 IGKV1D-43A0A0B4J1Z2 117 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 E9PQ18 207 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 LYZL6O75951 148 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 ATP6V1G2O95670 118 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 CLDN1O95832 211 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 IGFBP2P18065 325 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 UGT2B10P36537 528 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 POLR2IP36954 125 aaKnown RBP17.33■□□□□ 0.36
UPF3A-211ENST00000618700 RAD23AP54725 363 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 FMODQ06828 376 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 CD47Q08722 323 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 NPRL3Q12980 569 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 PTGES3Q15185 160 aaKnown RBP17.33■□□□□ 0.36
UPF3A-211ENST00000618700 LRRC36Q1X8D7 754 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 CEACAM16Q2WEN9 425 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 C10orf128Q5T292 105 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 ACSM5Q6NUN0 579 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 SLC25A47Q6Q0C1 308 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 PACRGLQ8N7B6 248 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 NPEPL1Q8NDH3 523 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 OR4K13Q8NH42 304 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 MCHR2Q969V1 340 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 BOD1Q96IK1 185 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 MBOAT4Q96T53 435 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 DDOQ99489 341 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 CMC2Q9NRP2 79 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 GPR52Q9Y2T5 361 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 ORC6Q9Y5N6 252 aa17.33■□□□□ 0.36
UPF3A-211ENST00000618700 C16orf97H3BN30 126 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 DHHO43323 396 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 SLC2A10O95528 541 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 QDPRP09417 244 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 CDH2P19022 906 aaPredicted RBP17.32■□□□□ 0.36
UPF3A-211ENST00000618700 SH3BGRP55822 239 aaPredicted RBP17.32■□□□□ 0.36
UPF3A-211ENST00000618700 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.32■□□□□ 0.36
UPF3A-211ENST00000618700 THEM4Q5T1C6 240 aa17.32■□□□□ 0.36
UPF3A-211ENST00000618700 C9orf135Q5VTT2 229 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms