RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ROBO4Q8WZ75 1007 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 CPNE4Q96A23 557 aaPredicted RBP12.7□□□□□ -0.38
USP39-220ENST00000613444 YIPF6Q96EC8 236 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 ABHD17AQ96GS6 310 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 SLC25A44Q96H78 314 aaPredicted RBP12.7□□□□□ -0.38
USP39-220ENST00000613444 ZNF385AQ96PM9 386 aaKnown RBP12.7□□□□□ -0.38
USP39-220ENST00000613444 CNN2Q99439 309 aaKnown RBP12.7□□□□□ -0.38
USP39-220ENST00000613444 SF3B5Q9BWJ5 86 aaKnown RBP12.7□□□□□ -0.38
USP39-220ENST00000613444 NAA50Q9GZZ1 169 aaKnown RBP12.7□□□□□ -0.38
USP39-220ENST00000613444 MARCH7Q9H992 704 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 ING1Q9UK53 422 aaPredicted RBP12.7□□□□□ -0.38
USP39-220ENST00000613444 PIEZO2Q9H5I5 2752 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 A0A087WV48 116 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 C1QTNF9BB2RNN3 333 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 TFECO14948 347 aaPredicted RBP12.69□□□□□ -0.38
USP39-220ENST00000613444 SLC16A7O60669 478 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 GPANK1O95872 356 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 C1QTNF9P0C862 333 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 TGFBR2P37173 567 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 LIPAP38571 399 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 NAA10P41227 235 aaPredicted RBP12.69□□□□□ -0.38
USP39-220ENST00000613444 HCCSP53701 268 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 ZNF85Q03923 595 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 SRYQ05066 204 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 SPHARQ15513 63 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 MED22Q15528 200 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 HIST3H3Q16695 136 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 RFLNBQ8N5W9 214 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 EXTL1Q92935 676 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 DGCR14Q96DF8 476 aaKnown RBP12.69□□□□□ -0.38
USP39-220ENST00000613444 RACGAP1Q9H0H5 632 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 INPP5EQ9NRR6 644 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 CACNA1CQ13936 2221 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 A0A1W2PQL4 384 aaPredicted RBP12.69□□□□□ -0.38
USP39-220ENST00000613444 MYL12BO14950 172 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 CYTIPO60759 359 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 ZNF432O94892 652 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 CPN1P15169 458 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 NTF4P34130 210 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 PTGS2P35354 604 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 UCNP55089 124 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 CLDN17P56750 224 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 CAMK2DQ13557 499 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 PDSS1Q5T2R2 415 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 GPR107Q5VW38 600 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 LRRC69Q6ZNQ3 347 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 SSX6Q7RTT6 188 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 CLVS1Q8IUQ0 354 aaPredicted RBP12.69□□□□□ -0.38
USP39-220ENST00000613444 OR10H4Q8NGA5 316 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 WDYHV1Q96HA8 205 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 OPALINQ96PE5 141 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 TBX5Q99593 518 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 MGLLQ99685 303 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 LDAHQ9H6V9 325 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 TIGARQ9NQ88 270 aa12.69□□□□□ -0.38
USP39-220ENST00000613444 SVILO95425 2214 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 GTF3C1Q12789 2109 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 A0A1B0GVC2 190 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 IGHG1P01857 330 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 OR2T7P0C7T2 308 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 PSKH1P11801 424 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 WNT4P56705 351 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 GALEQ14376 348 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 C3AR1Q16581 482 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 MEIOBQ8N635 442 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 NOXO1Q8NFA2 376 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 OR2T27Q8NH04 317 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 ADAD1Q96M93 576 aaKnown RBP12.68□□□□□ -0.38
USP39-220ENST00000613444 FUNDC2Q9BWH2 189 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 RERGLQ9H628 205 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 PLSCR2Q9NRY7 297 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 MRPL22Q9NWU5 206 aaKnown RBP12.68□□□□□ -0.38
USP39-220ENST00000613444 COPS3Q9UNS2 423 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 LHX6Q9UPM6 363 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 B3GNT3Q9Y2A9 372 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 FLVCR1Q9Y5Y0 555 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 DSPP15924 2871 aaKnown RBP12.68□□□□□ -0.38
USP39-220ENST00000613444 FREM1Q5H8C1 2179 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 MED12LQ86YW9 2145 aa12.68□□□□□ -0.38
USP39-220ENST00000613444 TVP23AA6NH52 213 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 NPIPA2E9PIF3 369 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 NPIPA3F8WFD2 350 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 LALBAP00709 142 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 CRABP1P29762 137 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 ARMCX4Q5H9R4 360 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 RPUSD3Q6P087 351 aaKnown RBP12.67□□□□□ -0.38
USP39-220ENST00000613444 ZNF322Q6U7Q0 402 aaPredicted RBP12.67□□□□□ -0.38
USP39-220ENST00000613444 PLXDC2Q6UX71 529 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 SLC16A12Q6ZSM3 486 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 FCRLAQ7L513 359 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 HDDC2Q7Z4H3 204 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 SLC35F2Q8IXU6 374 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 TMEM123Q8N131 208 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 OR52N1Q8NH53 320 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 ABHD3Q8WU67 409 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 OR2M2Q96R28 347 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 DOK1Q99704 481 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 ARHGAP9Q9BRR9 750 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 ALG8Q9BVK2 526 aa12.67□□□□□ -0.38
USP39-220ENST00000613444 WDR76Q9H967 626 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms