RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 TMPRSS2O15393 492 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 PLPP2O43688 288 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 SHOX2O60902 331 aaPredicted RBP5.38□□□□□ -1.55
CUX1-220ENST00000607092 SPAG7O75391 227 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 SERPINB7O75635 380 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 RP2O75695 350 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 SLC22A3O75751 556 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 PRSS23O95084 383 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 IGHV2-5P01817 119 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 IGFBP1P08833 259 aaPredicted RBP5.38□□□□□ -1.55
CUX1-220ENST00000607092 B4GALT1P15291 398 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ZNF250P15622 560 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 TUBG1P23258 451 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 PPIBP23284 216 aaKnown RBP5.38□□□□□ -1.55
CUX1-220ENST00000607092 PRTN3P24158 256 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 COL8A2P25067 703 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 GCH1P30793 250 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ALDH3B1P43353 468 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 MTNR1AP48039 350 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 GIPRP48546 466 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 SLC1A6P48664 564 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ZNF84P51523 738 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 UBA52P62987 128 aaKnown RBP5.38□□□□□ -1.55
CUX1-220ENST00000607092 PIGFQ07326 219 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 RBBP4Q09028 425 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ZP4Q12836 540 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 PMS2P3Q13401 168 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 CHI3L2Q15782 390 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 KRT71Q3SY84 523 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ARMCX4Q5H9R4 360 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ALG10BQ5I7T1 473 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ZNF362Q5T0B9 420 aaPredicted RBP5.38□□□□□ -1.55
CUX1-220ENST00000607092 ARL9Q6T311 187 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 TREML4Q6UXN2 200 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ZER1Q7Z7L7 766 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 HMGN2P46Q86SG4 172 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 RANBP3LQ86VV4 465 aaPredicted RBP5.38□□□□□ -1.55
CUX1-220ENST00000607092 VRK2Q86Y07 508 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 KDM8Q8N371 416 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 SPICQ8N5J4 248 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ZNF781Q8N8C0 355 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 SLC30A7Q8NEW0 376 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 SLC38A5Q8WUX1 472 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ZNF566Q969W8 418 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 TLCD1Q96CP7 247 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 KTI12Q96EK9 354 aaPredicted RBP5.38□□□□□ -1.55
CUX1-220ENST00000607092 TMEM19Q96HH6 336 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 ZNF607Q96SK3 696 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 GAL3ST1Q99999 423 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 TMEM43Q9BTV4 400 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 PTDSS2Q9BVG9 487 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 TMPRSS13Q9BYE2 586 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 RNF121Q9H920 327 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 SEC61A2Q9H9S3 476 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 TPT1P8Q9HAU6 139 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 SRA1Q9HD15 236 aaKnown RBP5.38□□□□□ -1.55
CUX1-220ENST00000607092 TUBG2Q9NRH3 451 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 AIG1Q9NVV5 245 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 MED29Q9NX70 200 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 MRPL39Q9NYK5 338 aaKnown RBP5.38□□□□□ -1.55
CUX1-220ENST00000607092 ZIM2Q9NZV7 527 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 TAAR3PQ9P1P4 343 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 B3GAT1Q9P2W7 334 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 EIF3KQ9UBQ5 218 aaKnown RBP5.38□□□□□ -1.55
CUX1-220ENST00000607092 CORO2BQ9UQ03 480 aa5.38□□□□□ -1.55
CUX1-220ENST00000607092 NBEAL2Q6ZNJ1 2754 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 A0A1B0GWA3 101 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 CENPBD1B2RD01 187 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 IFNL4K9M1U5 179 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 SURF4O15260 269 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 HDAC3O15379 428 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 RGS16O15492 202 aaPredicted RBP5.37□□□□□ -1.55
CUX1-220ENST00000607092 TYROBPO43914 113 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 FMO6PO60774 539 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 HIST1H2ABP04908 130 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 LCKP06239 509 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 NAT2P11245 290 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 ETFAP13804 333 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 TCN1P20061 433 aaPredicted RBP5.37□□□□□ -1.55
CUX1-220ENST00000607092 TNFSF4P23510 183 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 APLNRP35414 380 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 MDH1P40925 334 aaKnown RBP5.37□□□□□ -1.55
CUX1-220ENST00000607092 ETV4P43268 484 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 ZNF81P51508 661 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 SLC18A1P54219 525 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 UCP2P55851 309 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 RGS8P57771 180 aaPredicted RBP5.37□□□□□ -1.55
CUX1-220ENST00000607092 UFM1P61960 85 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 MVKQ03426 396 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 EGR4Q05215 589 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 STX3Q13277 289 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 ZNF718Q3SXZ3 478 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 TTMPQ5BVD1 217 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 C6orf10Q5SRN2 563 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 FAM205BPQ63HN1 556 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 REEP3Q6NUK4 255 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 DHRS4L2Q6PKH6 230 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 DOK3Q7L591 496 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 HIST3H2AQ7L7L0 130 aa5.37□□□□□ -1.55
CUX1-220ENST00000607092 SLC16A14Q7RTX9 510 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms