RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MIER2Q8N344 545 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 PARP8Q8N3A8 854 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 C17orf53Q8N3J3 647 aaPredicted RBP8.56□□□□□ -1.04
TRIM28-210ENST00000597618 SLC22A24Q8N4F4 322 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 KLHL36Q8N4N3 616 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 KIR3DL3Q8N743 410 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 OR52E2Q8NGJ4 325 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 OR1J2Q8NGS2 313 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 OR6S1Q8NH40 331 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 FGFBP3Q8TAT2 258 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 SLC41A3Q96GZ6 507 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 TXNDC15Q96J42 360 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 PPP1R36Q96LQ0 422 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 ASPNQ9BXN1 380 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 LRMDAQ9H2I8 198 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 OR5V1Q9UGF6 321 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 IFT52Q9Y366 437 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 CHST2Q9Y4C5 530 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 NPTNQ9Y639 398 aa8.56□□□□□ -1.04
TRIM28-210ENST00000597618 ARHGAP32A7KAX9 2087 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 IGKV1D-42A0A075B6H8 117 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 A0A0G2JPF8 293 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 TMEM247A6NEH6 219 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 FAM181BA6NEQ2 426 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 A8MXK9 166 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 HNRNPCL2B2RXH8 293 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 HNRNPCL3B7ZW38 293 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 TRAPPC2LH3BP13 241 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 HNRNPCL1O60812 293 aaKnown RBP8.55□□□□□ -1.04
TRIM28-210ENST00000597618 GPANK1O95872 356 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 IGHV2-70P01814 119 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 HNRNPCL4P0DMR1 293 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 PPIAL4GP0DN37 164 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 IGHV4-38-2P0DP08 117 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 CDKN2CP42773 168 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 MMP15P51511 669 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 HOXC5Q00444 222 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 SLC36A2Q495M3 483 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 RPS26P11Q5JNZ5 115 aaPredicted RBP8.55□□□□□ -1.04
TRIM28-210ENST00000597618 PXKQ7Z7A4 578 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 C1QL4Q86Z23 238 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 EPS8L3Q8TE67 593 aaKnown RBP8.55□□□□□ -1.04
TRIM28-210ENST00000597618 SLC38A5Q8WUX1 472 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 DNAJA4Q8WW22 397 aaPredicted RBP8.55□□□□□ -1.04
TRIM28-210ENST00000597618 DIRC2Q96SL1 478 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 EPYCQ99645 322 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 RBM4BQ9BQ04 359 aaKnown RBP8.55□□□□□ -1.04
TRIM28-210ENST00000597618 RNF121Q9H920 327 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 NPHS2Q9NP85 383 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 CYSLTR2Q9NS75 346 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 TMEM38BQ9NVV0 291 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 SLC17A7Q9P2U7 560 aa8.55□□□□□ -1.04
TRIM28-210ENST00000597618 IQCMA0A1B0GVH7 501 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 A0A1B0GWA3 101 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 CLPSL1A2RUU4 121 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 SRRM5B3KS81 715 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 HOXA3O43365 443 aaPredicted RBP8.54□□□□□ -1.04
TRIM28-210ENST00000597618 ZNF500O60304 480 aaPredicted RBP8.54□□□□□ -1.04
TRIM28-210ENST00000597618 SERPINI2O75830 405 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 NDUFA7O95182 113 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 PLATP00750 562 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 NGFP01138 241 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 ADH4P08319 380 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 SBK2P0C263 348 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 ETFAP13804 333 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 AHCYP23526 432 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 LIPAP38571 399 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 CRATP43155 626 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 SLC6A9P48067 706 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 DSTNP60981 165 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 PLP2Q04941 152 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 PAX8Q06710 450 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 PDCD1Q15116 288 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 TMEM155Q4W5P6 130 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 ESCO2Q56NI9 601 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 ZMAT1Q5H9K5 638 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 ALG10BQ5I7T1 473 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 FAM205BPQ63HN1 556 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 NHLRC1Q6VVB1 395 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 SLC16A14Q7RTX9 510 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 LSMEM1Q8N8F7 131 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 RBM15BQ8NDT2 890 aaKnown RBP8.54□□□□□ -1.04
TRIM28-210ENST00000597618 OR1J1Q8NGS3 322 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 TMEM54Q969K7 222 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 TMEM19Q96HH6 336 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 OR52E6Q96RD3 313 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 SH3GL3Q99963 347 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 RSPO3Q9BXY4 272 aaPredicted RBP8.54□□□□□ -1.04
TRIM28-210ENST00000597618 PATZ1Q9HBE1 687 aaKnown RBP8.54□□□□□ -1.04
TRIM28-210ENST00000597618 THUMPD1Q9NXG2 353 aaKnown RBP8.54□□□□□ -1.04
TRIM28-210ENST00000597618 MRPL39Q9NYK5 338 aaKnown RBP8.54□□□□□ -1.04
TRIM28-210ENST00000597618 GLTPQ9NZD2 209 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 CGGBP1Q9UFW8 167 aaPredicted RBP8.54□□□□□ -1.04
TRIM28-210ENST00000597618 IL20RAQ9UHF4 553 aa8.54□□□□□ -1.04
TRIM28-210ENST00000597618 IGHV3OR16-10A0A075B7F0 116 aa8.53□□□□□ -1.04
TRIM28-210ENST00000597618 ZSCAN5BA6NJL1 495 aa8.53□□□□□ -1.04
TRIM28-210ENST00000597618 SLC22A31A6NKX4 558 aa8.53□□□□□ -1.04
TRIM28-210ENST00000597618 PLPP3O14495 311 aa8.53□□□□□ -1.04
TRIM28-210ENST00000597618 RFXANKO14593 260 aa8.53□□□□□ -1.04
TRIM28-210ENST00000597618 TGDSO95455 350 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms