RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 LGALS12Q96DT0 336 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 MRPL48Q96GC5 212 aaKnown RBP13.55□□□□□ -0.24
TRIM28-209ENST00000597423 GMPPAQ96IJ6 420 aaPredicted RBP13.55□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF385AQ96PM9 386 aaKnown RBP13.55□□□□□ -0.24
TRIM28-209ENST00000597423 OR2M2Q96R28 347 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 HCAR1Q9BXC0 346 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 RACGAP1Q9H0H5 632 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 INPP5EQ9NRR6 644 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 GLTPQ9NZD2 209 aa13.55□□□□□ -0.24
TRIM28-209ENST00000597423 MPDZO75970 2070 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 ASPMQ8IZT6 3477 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 CD8B2A6NJW9 211 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 KRT33AO76009 404 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 AQP8O94778 261 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 HLA-DQA2P01906 255 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 GYPBP06028 91 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 TPOP07202 933 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 STSP08842 583 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 QDPRP09417 244 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 CLUP10909 449 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 EDN3P14138 238 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 ATP6V1B1P15313 513 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 ACTC1P68032 377 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 ACTA1P68133 377 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 MVKQ03426 396 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 GGTLC2Q14390 218 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 RNLSQ5VYX0 342 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 NSUN5P2Q63ZY6 315 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 ADGRE4PQ86SQ3 457 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 GLB1L2Q8IW92 636 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 C20orf196Q8IYI0 205 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 GPR137CQ8N3F9 429 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 OR51G2Q8NGK0 314 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 FAM57AQ8TBR7 257 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 TMEM54Q969K7 222 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 CNN2Q99439 309 aaKnown RBP13.54□□□□□ -0.24
TRIM28-209ENST00000597423 MNTQ99583 582 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 SLX1AQ9BQ83 275 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 CDCA4Q9BXL8 241 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 DIMT1Q9UNQ2 313 aaKnown RBP13.54□□□□□ -0.24
TRIM28-209ENST00000597423 ERGIC3Q9Y282 383 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 EXOSC1Q9Y3B2 195 aaKnown RBP13.54□□□□□ -0.24
TRIM28-209ENST00000597423 NCKAP5O14513 1909 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 FRYQ5TBA9 3013 aa13.54□□□□□ -0.24
TRIM28-209ENST00000597423 CCDC182A6NF36 153 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 TMCC2O75069 709 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF432O94892 652 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 OR2T7P0C7T2 308 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF823P16415 610 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 PYCR1P32322 319 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF84P51523 738 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 NR1H2P55055 460 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 CDH15P55291 814 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 HIST3H3Q16695 136 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 EIF2S3LQ2VIR3 472 aaKnown RBP13.53□□□□□ -0.24
TRIM28-209ENST00000597423 RIPPLY2Q5TAB7 128 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 TUSC5Q8IXB3 177 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF100Q8IYN0 542 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 SPARTQ8N0X7 666 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 TMEM123Q8N131 208 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 ACBD7Q8N6N7 88 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 OR51L1Q8NGJ5 315 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 OR52I1Q8NGK6 324 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 OR2T27Q8NH04 317 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 FCGR1BQ92637 280 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 MCHR2Q969V1 340 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 ZNF775Q96BV0 537 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-209ENST00000597423 ZMYND19Q96E35 227 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-209ENST00000597423 TSSK2Q96PF2 358 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 ASF1BQ9NVP2 202 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 CLCF1Q9UBD9 225 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 EMC9Q9Y3B6 208 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 TMEM14AQ9Y6G1 99 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 COMMD3-BMI1R4GMX3 469 aa13.53□□□□□ -0.24
TRIM28-209ENST00000597423 FREM3P0C091 2139 aa13.52□□□□□ -0.24
TRIM28-209ENST00000597423 IGLV1-36A0A0B4J1U3 117 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 DAPL1A0PJW8 107 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 FAM171A2A8MVW0 826 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 WISP2O76076 250 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 TGM6O95932 706 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 SBK2P0C263 348 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 SELENOPP49908 381 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 TDGF1P3P51864 188 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 CASP6P55212 293 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 HSF2Q03933 536 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 ACSF3Q4G176 576 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-209ENST00000597423 C1orf185Q5T7R7 199 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 SLC25A47Q6Q0C1 308 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 TMPRSS11AQ6ZMR5 421 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 SLC16A9Q7RTY1 509 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 ABHD12BQ7Z5M8 362 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-209ENST00000597423 OR10H5Q8NGA6 315 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 NSMAFQ92636 917 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 APH1AQ96BI3 265 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 INTS14Q96SY0 518 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 CDADC1Q9BWV3 514 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 JAM3Q9BX67 310 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 ULBP2Q9BZM5 246 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 LINC00470Q9BZP3 86 aa13.52□□□□□ -0.25
TRIM28-209ENST00000597423 YIPF3Q9GZM5 350 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms