RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NTSR1P30989 418 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 NKPD1Q17RQ9 610 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 Q499Y3 187 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 TMEM240Q5SV17 173 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 DCAF12L2Q5VW00 463 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 B3GNTL1Q67FW5 361 aaPredicted RBP13.89□□□□□ -0.19
UPF1-204ENST00000596842 OR10K2Q6IF99 312 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 SLC2A12Q8TD20 617 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 TMEM106CQ9BVX2 250 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 COMMD4Q9H0A8 199 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 HAO2Q9NYQ3 351 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 DCDC2BA2VCK2 349 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 HIST1H2ABP04908 130 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 CTSEP14091 401 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 MNDAP41218 407 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 HIST3H2AQ7L7L0 130 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 ZNF454Q8N9F8 522 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 HIST1H2ACQ93077 130 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 SLC22A13Q9Y226 551 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 PRELID3BQ9Y3B1 194 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 OIP5O43482 229 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 LPLP06858 475 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 VSIG10L2P0DP72 767 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 ARFIP1P53367 373 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 MGAT2Q10469 447 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 BAIAP2L2Q6UXY1 529 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 Q6ZSR6 202 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 OR6V1Q8N148 313 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 C16orf52Q8NHV5 167 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 LRRC46Q96FV0 321 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 KLHDC3Q9BQ90 382 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 TGIF2Q9GZN2 237 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 PTTG3PQ9NZH4 202 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 MRM2Q9UI43 246 aaKnown RBP13.89□□□□□ -0.19
UPF1-204ENST00000596842 ZNF337Q9Y3M9 751 aa13.89□□□□□ -0.19
UPF1-204ENST00000596842 A0A1B0GUH1 482 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 PLRG1O43660 514 aaKnown RBP13.88□□□□□ -0.19
UPF1-204ENST00000596842 CD3DP04234 171 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 SPARCP09486 303 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 IFNGR1P15260 489 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 MC2RQ01718 297 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 FHL1Q13642 323 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 ALKBH1Q13686 389 aaKnown RBP13.88□□□□□ -0.19
UPF1-204ENST00000596842 NFATC4Q14934 902 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 C9orf152Q5JTZ5 239 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 NPSR1Q6W5P4 371 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 DPY19L2P2Q6ZN68 376 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 ZNF227Q86WZ6 799 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 KDM8Q8N371 416 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 SLC37A2Q8TED4 501 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 SEC22AQ96IW7 307 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 BMFQ96LC9 184 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 PTDSS2Q9BVG9 487 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 SARGQ9BW04 601 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 SOHLH2Q9NX45 425 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 ATXN7L1Q9ULK2 861 aaPredicted RBP13.88□□□□□ -0.19
UPF1-204ENST00000596842 URB1O60287 2271 aaKnown RBP13.88□□□□□ -0.19
UPF1-204ENST00000596842 PRAF2O60831 178 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 GLCEO94923 617 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 NKX2-2O95096 273 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 AK1P00568 194 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 IGF2P01344 180 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 ARHGAP40Q5TG30 622 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 PM20D2Q8IYS1 436 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 DND1Q8IYX4 353 aaKnown RBP13.88□□□□□ -0.19
UPF1-204ENST00000596842 DEFB119Q8N690 84 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 PRTFDC1Q9NRG1 225 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 PIPOXQ9P0Z9 390 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 KCNG2Q9UJ96 466 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 A0A087WV62 115 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 SERINC4A6NH21 518 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 TRIM77I1YAP6 450 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 CCSO14618 274 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 GPRIN2O60269 458 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 S100A11P31949 105 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 POU3F4P49335 361 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 H2BFSP57053 126 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 ALG11Q2TAA5 492 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 TEX19Q8NA77 164 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 TM4SF19Q96DZ7 209 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 ADOQ96SZ5 270 aa13.88□□□□□ -0.19
UPF1-204ENST00000596842 MCRIP1C9JLW8 97 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 SUSD5O60279 629 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 TGM6O95932 706 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 FAUP35544 74 aaKnown RBP13.87□□□□□ -0.19
UPF1-204ENST00000596842 SEC61A1P61619 476 aaKnown RBP13.87□□□□□ -0.19
UPF1-204ENST00000596842 OR7E24Q6IFN5 339 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 TMUB2Q71RG4 321 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 MUC20Q8N307 709 aaPredicted RBP13.87□□□□□ -0.19
UPF1-204ENST00000596842 JAGN1Q8N5M9 183 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 C3orf49Q96BT1 292 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 HAVCR1Q96D42 359 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 CGGBP1Q9UFW8 167 aaPredicted RBP13.87□□□□□ -0.19
UPF1-204ENST00000596842 SPAG17Q6Q759 2223 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 ANKRD20A5PA0PJZ0 165 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 AKR7A3O95154 331 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 RLN2P04090 185 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 SMIM10L1P0DMW3 83 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 FCARP24071 287 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 HLXQ14774 488 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms