RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	ZNF35	P13682	527 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	COL8A2	P25067	703 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	KDELR2	P33947	212 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	HILS1	P60008	231 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	BNIP1	Q12981	228 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	C1D	Q13901	141 aa	Known RBP	11.65	□□□□□ -0.54
SS18-222	ENST00000582792	SHQ1	Q6PI26	577 aa	Known RBP	11.65	□□□□□ -0.54
SS18-222	ENST00000582792	USP43	Q70EL4	1123 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	DEFB107A	Q8IZN7	70 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	TMEM123	Q8N131	208 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	RDH5	Q92781	318 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	GCDH	Q92947	438 aa	Predicted RBP	11.65	□□□□□ -0.54
SS18-222	ENST00000582792	MS4A3	Q96HJ5	214 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	CDRT15	Q96T59	188 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	KCTD14	Q9BQ13	255 aa	Predicted RBP	11.65	□□□□□ -0.54
SS18-222	ENST00000582792	ADA2	Q9NZK5	511 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	PRPF19	Q9UMS4	504 aa	Known RBP	11.65	□□□□□ -0.54
SS18-222	ENST00000582792	PCDHB10	Q9UN67	800 aa		11.65	□□□□□ -0.54
SS18-222	ENST00000582792	LOC102725191	A0A1B0GVB3	256 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	TRIM77	I1YAP6	450 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792		M0R082	166 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792		M0R3G1	203 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	WNT9B	O14905	357 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	TRAF3IP2	O43734	574 aa	Predicted RBP	11.64	□□□□□ -0.55
SS18-222	ENST00000582792	OR2T1	O43869	369 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	RGS9	O75916	674 aa	Predicted RBP	11.64	□□□□□ -0.55
SS18-222	ENST00000582792	HLA-H	P01893	362 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	GAA	P10253	952 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF14	P17017	642 aa	Predicted RBP	11.64	□□□□□ -0.55
SS18-222	ENST00000582792	TCN1	P20061	433 aa	Predicted RBP	11.64	□□□□□ -0.55
SS18-222	ENST00000582792	CD247	P20963	164 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	AQP1	P29972	269 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	GLRX	P35754	106 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	ALDH3B1	P43353	468 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	TMEM33	P57088	247 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	MRPS11	P82912	194 aa	Known RBP	11.64	□□□□□ -0.55
SS18-222	ENST00000582792	GSG1	Q2KHT4	349 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	PHYHD1	Q5SRE7	291 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	FAM69A	Q5T7M9	428 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	THSD4	Q6ZMP0	1018 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	PEG10	Q86TG7	708 aa	Known RBP	11.64	□□□□□ -0.55
SS18-222	ENST00000582792	OR51F2	Q8NH61	342 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF417	Q8TAU3	575 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	TAMM41	Q96BW9	452 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF75A	Q96N20	296 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF587	Q96SQ5	575 aa	Predicted RBP	11.64	□□□□□ -0.55
SS18-222	ENST00000582792	ARHGDIG	Q99819	225 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	SYT3	Q9BQG1	590 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	RSPO3	Q9BXY4	272 aa	Predicted RBP	11.64	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF275	Q9NSD4	429 aa	Predicted RBP	11.64	□□□□□ -0.55
SS18-222	ENST00000582792	TAS2R1	Q9NYW7	299 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	TREM2	Q9NZC2	230 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	SLC13A4	Q9UKG4	626 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	BAG5	Q9UL15	447 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	NOX1	Q9Y5S8	564 aa		11.64	□□□□□ -0.55
SS18-222	ENST00000582792	TRAV20	A0A0B4J274	112 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	CXCR6	O00574	342 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	GSTA4	O15217	222 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	KCNAB3	O43448	404 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	FMO6P	O60774	539 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	GMNN	O75496	209 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	PNP	P00491	289 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	CD79A	P11912	226 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	EPHA1	P21709	976 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	RASSF2	P50749	326 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	CRYBA2	P53672	197 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	LMO4	P61968	165 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	HOXC5	Q00444	222 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	MAD2L1BP	Q15013	274 aa	Predicted RBP	11.63	□□□□□ -0.55
SS18-222	ENST00000582792	DNAL1	Q4LDG9	190 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	FAHD2B	Q6P2I3	314 aa	Predicted RBP	11.63	□□□□□ -0.55
SS18-222	ENST00000582792	C5orf46	Q6UWT4	87 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	H1FNT	Q75WM6	255 aa	Predicted RBP	11.63	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF627	Q7L945	461 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	LRP11	Q86VZ4	500 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	C20orf196	Q8IYI0	205 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	TEX29	Q8N6K0	151 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	LSMEM1	Q8N8F7	131 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	GPR32P1	Q8NGA4	272 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	SLC26A7	Q8TE54	656 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	SLC38A4	Q969I6	547 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	YIPF5	Q969M3	257 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	TAAR8	Q969N4	342 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	FAHD2A	Q96GK7	314 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	LRR1	Q96L50	414 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	JMJD8	Q96S16	334 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	RBM4	Q9BWF3	364 aa	Known RBP	11.63	□□□□□ -0.55
SS18-222	ENST00000582792	ZNF416	Q9BWM5	594 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	MUC13	Q9H3R2	512 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	GORASP2	Q9H8Y8	452 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	C12orf10	Q9HB07	376 aa		11.63	□□□□□ -0.55
SS18-222	ENST00000582792	MYEF2	Q9P2K5	600 aa	Known RBP	11.63	□□□□□ -0.55
SS18-222	ENST00000582792	TES	Q9UGI8	421 aa	Known RBP	11.63	□□□□□ -0.55
SS18-222	ENST00000582792	TG	P01266	2768 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	PPIH	O43447	177 aa	Known RBP	11.62	□□□□□ -0.55
SS18-222	ENST00000582792	TPST1	O60507	370 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	RP2	O75695	350 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	NCR1	O76036	304 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	GRPR	P30550	384 aa		11.62	□□□□□ -0.55
SS18-222	ENST00000582792	LIMS1	P48059	325 aa		11.62	□□□□□ -0.55

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