RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 LRFN4Q6PJG9 635 aa22.26■■□□□ 1.15
SHMT1-207ENST00000580002 PROKR2Q8NFJ6 384 aa22.26■■□□□ 1.15
SHMT1-207ENST00000580002 RFKQ969G6 155 aa22.26■■□□□ 1.15
SHMT1-207ENST00000580002 SLX1AQ9BQ83 275 aa22.26■■□□□ 1.15
SHMT1-207ENST00000580002 ALG12Q9BV10 488 aa22.26■■□□□ 1.15
SHMT1-207ENST00000580002 CLCF1Q9UBD9 225 aa22.26■■□□□ 1.15
SHMT1-207ENST00000580002 MPZL1O95297 269 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 CDK1P06493 297 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 CLRN1P58418 232 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 GABARAPL2P60520 117 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 DOC2BQ14184 412 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 KRTCAP3Q53RY4 240 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 RPTNQ6XPR3 784 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 C3P1Q6ZMU1 363 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 SPARTQ8N0X7 666 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 RPRMLQ8N4K4 120 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 NOXO1Q8NFA2 376 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 CLEC2DQ9UHP7 191 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 BLOC1S6Q9UL45 172 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 COA3Q9Y2R0 106 aaPredicted RBP22.25■■□□□ 1.15
SHMT1-207ENST00000580002 IGKV3D-15A0A087WSY6 115 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 SELENOFO60613 162 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 IGHG1P01857 330 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 TPOP07202 933 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 PSKH1P11801 424 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 NAA10P41227 235 aaPredicted RBP22.25■■□□□ 1.15
SHMT1-207ENST00000580002 CENPAP49450 140 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 ZNF773Q6PK81 442 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 NUFIP2Q7Z417 695 aaKnown RBP22.25■■□□□ 1.15
SHMT1-207ENST00000580002 ZBTB46Q86UZ6 589 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 STX19Q8N4C7 294 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 ZNF837Q96EG3 531 aaPredicted RBP22.25■■□□□ 1.15
SHMT1-207ENST00000580002 SNX18Q96RF0 628 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 ADGRL4Q9HBW9 690 aa22.25■■□□□ 1.15
SHMT1-207ENST00000580002 MRPS18AQ9NVS2 196 aaKnown RBP22.25■■□□□ 1.15
SHMT1-207ENST00000580002 OR14I1A6ND48 311 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 EFCAB10A6NFE3 127 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 RGS10O43665 173 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 GLCEO94923 617 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 IGHV3-9P01782 118 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 SCG5P05408 212 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 RPS27P42677 84 aaKnown RBP22.24■■□□□ 1.15
SHMT1-207ENST00000580002 HIST3H3Q16695 136 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 ACSF3Q4G176 576 aaPredicted RBP22.24■■□□□ 1.15
SHMT1-207ENST00000580002 RTL6Q6ICC9 239 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 AAED1Q7RTV5 226 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 ZSCAN2Q7Z7L9 614 aaPredicted RBP22.24■■□□□ 1.15
SHMT1-207ENST00000580002 C9orf106Q8NAJ2 232 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 IPCEF1Q8WWN9 437 aaPredicted RBP22.24■■□□□ 1.15
SHMT1-207ENST00000580002 MCHR2Q969V1 340 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 TBX5Q99593 518 aa22.24■■□□□ 1.15
SHMT1-207ENST00000580002 CNOT2Q9NZN8 540 aaKnown RBP22.24■■□□□ 1.15
SHMT1-207ENST00000580002 WARS2Q9UGM6 360 aaKnown RBP22.24■■□□□ 1.15
SHMT1-207ENST00000580002 SLC22A31A6NKX4 558 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 M0R3G1 203 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 UPK3AO75631 287 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 TFP02787 698 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 QDPRP09417 244 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 MEP1BQ16820 701 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 FAM205BPQ63HN1 556 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 SEM1Q6ZVN7 128 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 LINGO2Q7L985 606 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 CD163Q86VB7 1156 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 GCNT2Q8N0V5 402 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 RFLNBQ8N5W9 214 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 OR2T4Q8NH00 348 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 WDR76Q9H967 626 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 KLHL9Q9P2J3 617 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 EXOGQ9Y2C4 368 aaKnown RBP22.23■■□□□ 1.15
SHMT1-207ENST00000580002 FKBP7Q9Y680 259 aa22.23■■□□□ 1.15
SHMT1-207ENST00000580002 TTLL8A6PVC2 850 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 J3QRE1 110 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 PIPP12273 146 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-207ENST00000580002 CD79BP40259 229 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 TMEM54Q969K7 222 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 ADAD1Q96M93 576 aaKnown RBP22.22■■□□□ 1.15
SHMT1-207ENST00000580002 RNF122Q9H9V4 155 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 GLTPQ9NZD2 209 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 FOXD3Q9UJU5 478 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-207ENST00000580002 NOSIPQ9Y314 301 aaKnown RBP22.22■■□□□ 1.15
SHMT1-207ENST00000580002 MED12LQ86YW9 2145 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 PHF3Q92576 2039 aaKnown RBP22.22■■□□□ 1.15
SHMT1-207ENST00000580002 A0A087WXM4 84 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 TRIM64CA6NLI5 447 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 FADS2O95864 444 aaKnown RBP22.22■■□□□ 1.15
SHMT1-207ENST00000580002 TFAP2AP05549 437 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 CDAP32320 146 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 ETV1P50549 477 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 EMX1Q04741 257 aaPredicted RBP22.22■■□□□ 1.15
SHMT1-207ENST00000580002 ST3GAL2Q16842 350 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 SLC25A47Q6Q0C1 308 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 KCTD8Q6ZWB6 473 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 P4HA3Q7Z4N8 544 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 C20orf196Q8IYI0 205 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 OR6N1Q8NGY5 312 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 MYDGFQ969H8 173 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 TMEM80Q96HE8 168 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 RBP7Q96R05 134 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 BCO1Q9HAY6 547 aa22.22■■□□□ 1.15
SHMT1-207ENST00000580002 MRPL22Q9NWU5 206 aaKnown RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms