RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 RAP1AP62834 184 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 CDK5Q00535 292 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 ROR2Q01974 943 aaKnown RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 CD47Q08722 323 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 ITGADQ13349 1161 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 KRR1Q13601 381 aaKnown RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 SNTB1Q13884 538 aaKnown RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 GINS1Q14691 196 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 TRIP10Q15642 601 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 HIST3H3Q16695 136 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 LRRC36Q1X8D7 754 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 SLC35F1Q5T1Q4 408 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 SFRP5Q5T4F7 317 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 TMEM236Q5W0B7 351 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 FAM205BPQ63HN1 556 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 ACSM5Q6NUN0 579 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 LRFN4Q6PJG9 635 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 STAC2Q6ZMT1 411 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 PTCHD4Q6ZW05 846 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 HDDC2Q7Z4H3 204 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 PARP8Q8N3A8 854 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 LNX2Q8N448 690 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 IQCF1Q8N6M8 205 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 NOXO1Q8NFA2 376 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 OR2T33Q8NG76 320 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 OR52E2Q8NGJ4 325 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 OR4K13Q8NH42 304 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 MCHR2Q969V1 340 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 EME1Q96AY2 570 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 NMD3Q96D46 503 aaKnown RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 ZNF837Q96EG3 531 aaPredicted RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 ULBP2Q9BZM5 246 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 RNPEPL1Q9HAU8 725 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 CRLF2Q9HC73 371 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 GPR35Q9HC97 309 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 NPDC1Q9NQX5 325 aaPredicted RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 ASB6Q9NWX5 421 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 BAIAP2Q9UQB8 552 aa7.54□□□□□ -1.2
NUP88-211ENST00000575976 RRP15Q9Y3B9 282 aaKnown RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 INTS1Q8N201 2190 aaKnown RBP7.54□□□□□ -1.2
NUP88-211ENST00000575976 FBN3Q75N90 2809 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 RP1L1Q8IWN7 2480 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 IGKV1D-43A0A0B4J1Z2 117 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 CIB4A0PJX0 185 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 SLC22A23A1A5C7 686 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 PRSS37A4D1T9 235 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 PRSS44E7EML9 344 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 ZNF587BE7ETH6 402 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 C16orf97H3BN30 126 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 XKRYO14609 159 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 CASQ2O14958 399 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 DHHO43323 396 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 SLC2A10O95528 541 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 CDH2P19022 906 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 PSMB1P20618 241 aaKnown RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 PEX2P28328 305 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 EPHA2P29317 976 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 MPGP29372 298 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 NOS3P29474 1203 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 CCKARP32238 428 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 GRK5P34947 590 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 UGT2B10P36537 528 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 PCYT1AP49585 367 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 ZNF133P52736 654 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 ESRRGP62508 458 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 SLC34A1Q06495 639 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 FMODQ06828 376 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.53□□□□□ -1.2
NUP88-211ENST00000575976 DBPQ10586 325 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 P2RY6Q15077 328 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 PTGES3Q15185 160 aaKnown RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 CEACAM16Q2WEN9 425 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 PGGHGQ32M88 737 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 ZIK1Q3SY52 487 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 ZNF362Q5T0B9 420 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 SLC27A4Q6P1M0 643 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 LEG1Q6P5S2 330 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 SLC25A47Q6Q0C1 308 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 BHLHA15Q7RTS1 189 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 ABHD12BQ7Z5M8 362 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 JAZF1Q86VZ6 243 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 ZNF433Q8N7K0 673 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 SDR9C7Q8NEX9 313 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 LRRC46Q96FV0 321 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 RBP7Q96R05 134 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 NMNAT3Q96T66 252 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 DDOQ99489 341 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 ALG12Q9BV10 488 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 RIBC2Q9H4K1 309 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 SLC25A19Q9HC21 320 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 B3GAT2Q9NPZ5 323 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 TAS2R16Q9NYV7 291 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 GPR52Q9Y2T5 361 aa7.53□□□□□ -1.2
NUP88-211ENST00000575976 KLF2Q9Y5W3 355 aaPredicted RBP7.53□□□□□ -1.2
NUP88-211ENST00000575976 DIDO1Q9BTC0 2240 aaKnown RBP7.52□□□□□ -1.2
NUP88-211ENST00000575976 FREM1Q5H8C1 2179 aa7.52□□□□□ -1.21
NUP88-211ENST00000575976 OR6C68A6NDL8 312 aa7.52□□□□□ -1.21
NUP88-211ENST00000575976 ZAR1LA6NP61 321 aa7.52□□□□□ -1.21
NUP88-211ENST00000575976 AHCYL1O43865 530 aa7.52□□□□□ -1.21
NUP88-211ENST00000575976 RAD51DO75771 328 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms