RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 OR1J1Q8NGS3 322 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 DDB2Q92466 427 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 OR8B2Q96RD0 313 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 KCNA7Q96RP8 456 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 SLC19A3Q9BZV2 496 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 ZNF350Q9GZX5 532 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 C1orf198Q9H425 327 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 NOP53Q9NZM5 478 aaKnown RBP13.3□□□□□ -0.28
VPS53-218ENST00000575207 B3GAT1Q9P2W7 334 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 CAB39Q9Y376 341 aaPredicted RBP13.3□□□□□ -0.28
VPS53-218ENST00000575207 DNAH10Q8IVF4 4471 aa13.3□□□□□ -0.28
VPS53-218ENST00000575207 A8MT66 165 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 SUPT7LO94864 414 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 ENO1P06733 434 aaKnown RBP13.29□□□□□ -0.28
VPS53-218ENST00000575207 CHRM2P08172 466 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 CXCR1P25024 350 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 MPV17P39210 176 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 ZNF718Q3SXZ3 478 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 SPDYE7PQ495Y7 208 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 ZMAT1Q5H9K5 638 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 MBNL2Q5VZF2 373 aaKnown RBP13.29□□□□□ -0.28
VPS53-218ENST00000575207 LRR1Q96L50 414 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 CITED4Q96RK1 184 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 FOXB1Q99853 325 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 SIRPDQ9H106 197 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 LZTFL1Q9NQ48 299 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 PPP1R3CQ9UQK1 317 aa13.29□□□□□ -0.28
VPS53-218ENST00000575207 AKAP8O43823 692 aaKnown RBP13.28□□□□□ -0.28
VPS53-218ENST00000575207 FSTL3O95633 263 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 FAHP16930 419 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 KCNJ10P78508 379 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 C1DQ13901 141 aaKnown RBP13.28□□□□□ -0.28
VPS53-218ENST00000575207 TBC1D28Q2M2D7 210 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 ZNF841Q6ZN19 808 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 SKA3Q8IX90 412 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 OR1J2Q8NGS2 313 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 VANGL1Q8TAA9 524 aaPredicted RBP13.28□□□□□ -0.28
VPS53-218ENST00000575207 NPRL2Q8WTW4 380 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 CLPTM1LQ96KA5 538 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 TMEM246Q9BRR3 403 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 MECRQ9BV79 373 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 MSL2Q9HCI7 577 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 INPP5EQ9NRR6 644 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 SERTAD4Q9NUC0 356 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 SLC17A7Q9P2U7 560 aa13.28□□□□□ -0.28
VPS53-218ENST00000575207 DUXAA6NLW8 204 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 CLDN24A6NM45 220 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 A8MVM7 634 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 FAAHO00519 579 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 PF4P02776 101 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 PF4V1P10720 104 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 PNMTP11086 282 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 CHATP28329 748 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 SERPINB8P50452 374 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 NAB1Q13506 487 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 THEM4Q5T1C6 240 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 METTL11BQ5VVY1 283 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 CARD17Q5XLA6 110 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 KRT77Q7Z794 578 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 COMTD1Q86VU5 262 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 SNX32Q86XE0 403 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 GATAD1Q8WUU5 269 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 CNOT9Q92600 299 aaKnown RBP13.27□□□□□ -0.29
VPS53-218ENST00000575207 OXGR1Q96P68 337 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 SEMA6AQ9H2E6 1030 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 B3GAT2Q9NPZ5 323 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 ZMAT5Q9UDW3 170 aaKnown RBP13.27□□□□□ -0.29
VPS53-218ENST00000575207 MAB21L2Q9Y586 359 aa13.27□□□□□ -0.29
VPS53-218ENST00000575207 PRAMEF27A3QJZ7 478 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 GSTA2P09210 222 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 TFPTP0C1Z6 253 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 RPS26P62854 115 aaKnown RBP13.26□□□□□ -0.29
VPS53-218ENST00000575207 BNIP2Q12982 314 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 CHI3L2Q15782 390 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 UNC50Q53HI1 259 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 C1orf140Q5VVS0 124 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 C16orf62Q7Z3J2 963 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 PSMA8Q8TAA3 256 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 KLF14Q8TD94 323 aaPredicted RBP13.26□□□□□ -0.29
VPS53-218ENST00000575207 TSSK3Q96PN8 268 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 CCT7Q99832 543 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 LRMDAQ9H2I8 198 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 RNF121Q9H920 327 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 STK38LQ9Y2H1 464 aa13.26□□□□□ -0.29
VPS53-218ENST00000575207 FTCDNL1E5RQL4 147 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 NPIPB7O75200 414 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 SEC22BO75396 215 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 PTHP01270 115 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 GUSBP08236 651 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 UQCRBP14927 111 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 GTF2E2P29084 291 aaKnown RBP13.25□□□□□ -0.29
VPS53-218ENST00000575207 PKNOX1P55347 436 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 KIAA0040Q15053 153 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 ZNF404Q494X3 552 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 ZNF678Q5SXM1 525 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 SPATA46Q5T0L3 261 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 CD276Q5ZPR3 534 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 TYW3Q6IPR3 259 aaKnown RBP13.25□□□□□ -0.29
VPS53-218ENST00000575207 TRIM46Q7Z4K8 759 aa13.25□□□□□ -0.29
VPS53-218ENST00000575207 HMGN2P46Q86SG4 172 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms