RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 GABRA6Q16445 453 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 MICAQ29983 383 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 TIMM23BQ5SRD1 257 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 FAM205BPQ63HN1 556 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 C1orf94Q6P1W5 598 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 SMARCD3Q6STE5 483 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 NHLRC1Q6VVB1 395 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 YTHDF3Q7Z739 585 aaKnown RBP15.13■□□□□ 0.01
CLN3-217ENST00000565354 P2RY8Q86VZ1 359 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 AQP11Q8NBQ7 271 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 PAPD5Q8NDF8 572 aaKnown RBP15.13■□□□□ 0.01
CLN3-217ENST00000565354 C1orf162Q8NEQ5 155 aaPredicted RBP15.13■□□□□ 0.01
CLN3-217ENST00000565354 OR10G2Q8NGC3 310 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 OR52N5Q8NH56 324 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 GIPC3Q8TF64 312 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 UTP4Q969X6 686 aaKnown RBP15.13■□□□□ 0.01
CLN3-217ENST00000565354 KATNB1Q9BVA0 655 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 GLTPQ9NZD2 209 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 GRHPRQ9UBQ7 328 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 DNAJB9Q9UBS3 223 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 ZNF346Q9UL40 294 aaKnown RBP15.13■□□□□ 0.01
CLN3-217ENST00000565354 SIGLEC7Q9Y286 467 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 A0A1W2PPR1 153 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 A6NIZ1 184 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 NPIPB13A6NJU9 1138 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 NPIPB4C9JG80 1138 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 RPL36A-HNRNPH2H7BZ11 118 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 XKRYO14609 159 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 TRMUO75648 421 aaKnown RBP15.12■□□□□ 0.01
CLN3-217ENST00000565354 CD14P08571 375 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 CRYGSP22914 178 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 SLC6A6P31641 620 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 UBE2NP61088 152 aaKnown RBP15.12■□□□□ 0.01
CLN3-217ENST00000565354 RAP1BP61224 184 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 RAP1AP62834 184 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 ERVK-25P63136 954 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 CD47Q08722 323 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 TAB1Q15750 504 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 Q5PR19 223 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 PHYHD1Q5SRE7 291 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 LINGO2Q7L985 606 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 SSX8Q7RTT4 187 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 CIARTQ8N365 385 aaPredicted RBP15.12■□□□□ 0.01
CLN3-217ENST00000565354 C17orf78Q8N4C9 275 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 SYT14Q8NB59 555 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 NOXO1Q8NFA2 376 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 OR1K1Q8NGR3 316 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 TMEM54Q969K7 222 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 SLCO4A1Q96BD0 722 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 ZNF570Q96NI8 536 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 TSPAN32Q96QS1 320 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 GPA33Q99795 319 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 IL20RAQ9UHF4 553 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 MGAT4BQ9UQ53 548 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 AMDHD2Q9Y303 409 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 AP4S1Q9Y587 144 aa15.12■□□□□ 0.01
CLN3-217ENST00000565354 CENPBD1B2RD01 187 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 H7C1Q1 480 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 KLF4O43474 513 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 PTP4A3O75365 173 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 WNT11O96014 354 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 GASTP01350 101 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 IGHMP01871 453 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 THBDP07204 575 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 PGA4P0DJD7 388 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 PGA3P0DJD8 388 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 FCGR1AP12314 374 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 GSTM3P21266 225 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 FASP25445 335 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 GSSP48637 474 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 RPS6KA3P51812 740 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 ARF1P84077 181 aaKnown RBP15.11■□□□□ 0.01
CLN3-217ENST00000565354 MYBPC1Q00872 1141 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 KPNB1Q14974 876 aaKnown RBP15.11■□□□□ 0.01
CLN3-217ENST00000565354 BEX5Q5H9J7 111 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 ARMC4Q5T2S8 1044 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 ANKRD16Q6P6B7 361 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 C10orf67Q8IYJ2 551 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 LRRC75AQ8NAA5 344 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 OR52L1Q8NGH7 329 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 GTPBP3Q969Y2 492 aaKnown RBP15.11■□□□□ 0.01
CLN3-217ENST00000565354 PIK3IP1Q96FE7 263 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 MUS81Q96NY9 551 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 OR52D1Q9H346 318 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 SLC17A5Q9NRA2 495 aa15.11■□□□□ 0.01
CLN3-217ENST00000565354 PDP1Q9P0J1 537 aaPredicted RBP15.11■□□□□ 0.01
CLN3-217ENST00000565354 SONP18583 2426 aaKnown RBP15.1■□□□□ 0.01
CLN3-217ENST00000565354 A0A096LPE4 126 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 A0A1W2PPZ6 126 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 A0A1W2PR80 420 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 ZNF99A8MXY4 864 aaPredicted RBP15.1■□□□□ 0.01
CLN3-217ENST00000565354 QDPRP09417 244 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 CAPZA2P47755 286 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 ZNF84P51523 738 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 RUNX1T1Q06455 604 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 FHL1Q13642 323 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 RFX4Q33E94 735 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 TBRG1Q3YBR2 411 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 HIKESHIQ53FT3 197 aa15.1■□□□□ 0.01
CLN3-217ENST00000565354 RPL13AP3Q6NVV1 102 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms