RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 OR6M1Q8NGM8 313 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 OR10X1Q8NGY0 326 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 OR6F1Q8NGZ6 308 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 OR8U1Q8NH10 309 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TMEM163Q8TC26 289 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 MAPK15Q8TD08 544 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 CASTOR1Q8WTX7 329 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 U2AF1L4Q8WU68 220 aaKnown RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 LPAR1Q92633 364 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 NAT6Q93015 286 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 LHX4Q969G2 390 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 CMTM7Q96FZ5 175 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 CDKN2AIPNLQ96HQ2 116 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 Q96MT0 163 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TNFRSF13CQ96RJ3 184 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 NODALQ96S42 347 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 LPAR4Q99677 370 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 MAP1LC3CQ9BXW4 147 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 UGT2B28Q9BY64 529 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 TBL1XR1Q9BZK7 514 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 WWTR1Q9GZV5 400 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 DCSTAMPQ9H295 470 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 CALHM2Q9HA72 323 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 ANKHQ9HCJ1 492 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 C14orf105Q9NVL8 296 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 MSRB1Q9NZV6 116 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 DHCR7Q9UBM7 475 aaKnown RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 GHRLQ9UBU3 117 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 KLQ9UEF7 1012 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 IL17BQ9UHF5 180 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 ZNF391Q9UJN7 358 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 OSGIN2Q9Y236 505 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 YIPF1Q9Y548 306 aa4.56□□□□□ -1.68
VPS35-205ENST00000563984 RBM7Q9Y580 266 aaKnown RBP4.56□□□□□ -1.68
VPS35-205ENST00000563984 PTPRUQ92729 1446 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 KIF14Q15058 1648 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 ABCA5Q8WWZ7 1642 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 PPIAL4EA0A075B759 164 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 A0A1B0GVI7 797 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 C20orf202A1L168 122 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 FAM90A7PA6NKC0 464 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 C3orf70A6NLC5 250 aaPredicted RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 FAM90A22PA8MWA6 464 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 FAM90A12PA8MX19 464 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 ZNF99A8MXY4 864 aaPredicted RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 FAM90A23PA8MXZ1 464 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 PPIAL4DF5H284 164 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 TRAPPC2LH3BP13 241 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 H3BSA7 217 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 CLDN34H7C241 214 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 M0QYT0 321 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 SLC28A1O00337 649 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 AZIN1O14977 448 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 TCF21O43680 179 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 SSNA1O43805 119 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 UGT2B17O75795 530 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 RGS11O94810 467 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 GADD45GO95257 159 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 MT-CYBP00156 380 aaPredicted RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 MMP1P03956 469 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 FGF2P09038 288 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 PPIAL4FP0DN26 164 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 FOLR2P14207 255 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 HIST1H1BP16401 226 aaKnown RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 AKR1C4P17516 323 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 UQCRC2P22695 453 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 SLC2A5P22732 501 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 HMGB2P26583 209 aaKnown RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 SPRP35270 261 aaPredicted RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 GGT2P36268 569 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 HPCAL1P37235 193 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 PTGFRP43088 359 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 HTR5AP47898 357 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 RAB5CP51148 216 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 DUSP3P51452 185 aaPredicted RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 NOVA1P51513 510 aaKnown RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 MVDP53602 400 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 UBE2KP61086 200 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 RANP62826 216 aaKnown RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 PPP3R1P63098 170 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 INCA1Q0VD86 236 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 HYAL1Q12794 435 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 MAD2L1Q13257 205 aaPredicted RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 GRM4Q14833 912 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 TSNQ15631 228 aaKnown RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 TAF9Q16594 264 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 GUCA2BQ16661 112 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 ZNF658BQ4V348 819 aaPredicted RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 C6orf226Q5I0X4 101 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 GPRC6AQ5T6X5 926 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 SDHAF4Q5VUM1 108 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 TXNRD3NBQ6F5E7 133 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 C9orf47Q6ZRZ4 202 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 KCNMB4Q86W47 210 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 TMEM126BQ8IUX1 230 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 RIMKLAQ8IXN7 391 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 KLHDC8AQ8IYD2 350 aa4.55□□□□□ -1.68
VPS35-205ENST00000563984 C8orf59Q8N0T1 100 aaPredicted RBP4.55□□□□□ -1.68
VPS35-205ENST00000563984 CSNK1A1LQ8N752 337 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms