RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CCDC32Q9BV29 185 aa15.13■□□□□ 0.01
LDLR-206ENST00000557958 FANCFQ9NPI8 374 aa15.13■□□□□ 0.01
LDLR-206ENST00000557958 ACOXLQ9NUZ1 547 aa15.13■□□□□ 0.01
LDLR-206ENST00000557958 PLEKHB1Q9UF11 243 aaPredicted RBP15.13■□□□□ 0.01
LDLR-206ENST00000557958 HDGFL3Q9Y3E1 203 aa15.13■□□□□ 0.01
LDLR-206ENST00000557958 UGT2A1Q9Y4X1 527 aa15.13■□□□□ 0.01
LDLR-206ENST00000557958 CNOT1A5YKK6 2376 aaKnown RBP15.12■□□□□ 0.01
LDLR-206ENST00000557958 SLC22A23A1A5C7 686 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 SLC35F4A4IF30 521 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 DCTN6O00399 190 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 TERTO14746 1132 aaKnown RBP15.12■□□□□ 0.01
LDLR-206ENST00000557958 SNPHO15079 494 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 GATBO75879 557 aaKnown RBP15.12■□□□□ 0.01
LDLR-206ENST00000557958 ARL6IP5O75915 188 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 CCL3P10147 92 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 LIFP15018 202 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 DSCR4P56555 118 aaPredicted RBP15.12■□□□□ 0.01
LDLR-206ENST00000557958 HSF1Q00613 529 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 GLO1Q04760 184 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 GLYR1Q49A26 553 aaPredicted RBP15.12■□□□□ 0.01
LDLR-206ENST00000557958 LYPD4Q6UWN0 246 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 CEACAM19Q7Z692 300 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 DTX1Q86Y01 620 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 GTPBP8Q8N3Z3 284 aaPredicted RBP15.12■□□□□ 0.01
LDLR-206ENST00000557958 TEX19Q8NA77 164 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 OR1J4Q8NGS1 313 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 ASB17Q8WXJ9 295 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 ACOT12Q8WYK0 555 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 PHYHIPQ92561 330 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 SH2D2AQ9NP31 389 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 B9D1Q9UPM9 204 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 RPH3AQ9Y2J0 694 aaPredicted RBP15.12■□□□□ 0.01
LDLR-206ENST00000557958 HRH3Q9Y5N1 445 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 PTPRBP23467 1997 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 MS4A18H0YCH9 400 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 SLC16A7O60669 478 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 P04436 131 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 PPP3R1P63098 170 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 SRSF6Q13247 344 aaKnown RBP15.12■□□□□ 0.01
LDLR-206ENST00000557958 MS4A18Q3C1V0 323 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 ATP1A1-AS1Q5TC04 95 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 SLC35D2Q76EJ3 337 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 ASB10Q8WXI3 467 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 TMEM41AQ96HV5 264 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 DKKL1Q9UK85 242 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 ADAM30Q9UKF2 790 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 ITGB1BP2Q9UKP3 347 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 KLK13Q9UKR3 277 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 GRIP1Q9Y3R0 1128 aa15.12■□□□□ 0.01
LDLR-206ENST00000557958 TVP23AA6NH52 213 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 SHISA8B8ZZ34 492 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 SC5DO75845 299 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 LIPCP11150 499 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 IFNGR1P15260 489 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 DPP4P27487 766 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 POU3F1Q03052 451 aaPredicted RBP15.11■□□□□ 0.01
LDLR-206ENST00000557958 Q0VFX4 171 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 CAMK2BQ13554 666 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 MELKQ14680 651 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 ACSM3Q53FZ2 586 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 ZNF684Q5T5D7 378 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 H3F3CQ6NXT2 135 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 JMJD6Q6NYC1 403 aaPredicted RBP15.11■□□□□ 0.01
LDLR-206ENST00000557958 LAX1Q8IWV1 398 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 YIPF7Q8N8F6 280 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 OR5B2Q96R09 309 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 TRAPPC4Q9Y296 219 aa15.11■□□□□ 0.01
LDLR-206ENST00000557958 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.1■□□□□ 0.01
LDLR-206ENST00000557958 CBR3O75828 277 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 AKR7A3O95154 331 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 PRKAR1AP10644 381 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 IL11P20809 199 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 DEFA1P59665 94 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 DEFA3P59666 94 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 IFITM3Q01628 133 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 INSL4Q14641 139 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 INPP5JQ15735 1006 aaPredicted RBP15.1■□□□□ 0.01
LDLR-206ENST00000557958 TRILQ7L0X0 811 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 OTOSQ8NHW6 89 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 KCTD12Q96CX2 325 aaKnown RBP15.1■□□□□ 0.01
LDLR-206ENST00000557958 THOC3Q96J01 351 aaKnown RBP15.1■□□□□ 0.01
LDLR-206ENST00000557958 IP6K3Q96PC2 410 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 TTYH2Q9BSA4 534 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 ABCB10Q9NRK6 738 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 TEKT2Q9UIF3 430 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 IKZF2Q9UKS7 526 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 IGLV1-36A0A0B4J1U3 117 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 ZNF879B4DU55 563 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 TBX1O43435 398 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 EFNA2O43921 213 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 ZNF17P17021 662 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 ALOX5APP20292 161 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 SDHBP21912 280 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 OR2B6P58173 313 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 SLC35A1P78382 337 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 YIF1BQ5BJH7 314 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 ACER2Q5QJU3 275 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 B3GNTL1Q67FW5 361 aaPredicted RBP15.1■□□□□ 0.01
LDLR-206ENST00000557958 TIGD3Q6B0B8 471 aa15.1■□□□□ 0.01
LDLR-206ENST00000557958 SLC18B1Q6NT16 456 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms