RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 A8MXK9 166 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 LMX1BO60663 402 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 ECDO95905 644 aaPredicted RBP11.2□□□□□ -0.62
LDLR-205ENST00000557933 AMY2AP04746 511 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 IL32P24001 234 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 COL19A1Q14993 1142 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 NR0B2Q15466 257 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 MOGAT2Q3SYC2 334 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 Q499Y3 187 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 COL13A1Q5TAT6 717 aaPredicted RBP11.2□□□□□ -0.62
LDLR-205ENST00000557933 USP53Q70EK8 1073 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 KCTD9Q7L273 389 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 FAM220AQ7Z4H9 259 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 MARCH3Q86UD3 253 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 PRSS58Q8IYP2 241 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 PM20D2Q8IYS1 436 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 TDHQ8IZJ6 230 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 FAM71CQ8NEG0 241 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 NR4A3Q92570 626 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 MIB2Q96AX9 1013 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 NPAS1Q99742 590 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 CCDC3Q9BQI4 270 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 PLA2G2FQ9BZM2 168 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 RSPH9Q9H1X1 276 aaPredicted RBP11.2□□□□□ -0.62
LDLR-205ENST00000557933 C14orf105Q9NVL8 296 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 STEAP1Q9UHE8 339 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 PCNX3Q9H6A9 2034 aa11.2□□□□□ -0.62
LDLR-205ENST00000557933 TMEM235A6NFC5 223 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 PRAF2O60831 178 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 ATG12O94817 140 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 GLSO94925 669 aaPredicted RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 GPR75O95800 540 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 AVPR2P30518 371 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 SRSF3P84103 164 aaKnown RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 SPOCK1Q08629 439 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 SERTAD2Q14140 314 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 RBMS2Q15434 407 aaKnown RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 CD226Q15762 336 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 NKAIN2Q5VXU1 208 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 OR52W1Q6IF63 320 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 NPSR1Q6W5P4 371 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 BEST3Q8N1M1 668 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 ACBD4Q8NC06 268 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 RERGQ96A58 199 aaPredicted RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 PNPLA2Q96AD5 504 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 C7orf50Q9BRJ6 194 aaKnown RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 ZNF416Q9BWM5 594 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 NKX2-4Q9H2Z4 354 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 ASF1BQ9NVP2 202 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 ERVK-19Q9WJR5 959 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 NOP16Q9Y3C1 178 aaKnown RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 MUC3AQ02505 3323 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 TRAV14DV4A0A0A6YYC5 116 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 EEF1E1-BLOC1S5C9J1V9 151 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 D6RAR5 112 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 UPK3AO75631 287 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 OR2A4O95047 310 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 FGF2P09038 288 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 RAG2P55895 527 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 RPS15AP62244 130 aaKnown RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 MGAT2Q10469 447 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 ENPP2Q13822 863 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 GUCA2BQ16661 112 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 HACD4Q5VWC8 232 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 TFAP2EQ6VUC0 442 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 SLC36A1Q7Z2H8 476 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 PRSS35Q8N3Z0 413 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 GVQW1Q8N7I0 195 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 ZNF321PQ8N8H1 164 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 KTI12Q96EK9 354 aaPredicted RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 OR2A7Q96R45 310 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 SERINC2Q96SA4 455 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 HDAC8Q9BY41 377 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 SLITRK2Q9H156 845 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 ICAM5Q9UMF0 924 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 GGT3PA6NGU5 568 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 METTL12A8MUP2 240 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 DNASE2O00115 360 aaPredicted RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 CTAG2O75638 210 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 MPZL1O95297 269 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 NUDT14O95848 222 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 RPS4Y1P22090 263 aaKnown RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 UBE2IP63279 158 aaKnown RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 ALKBH1Q13686 389 aaKnown RBP11.19□□□□□ -0.62
LDLR-205ENST00000557933 C2orf76Q3KRA6 126 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 TMPPEQ6ZT21 453 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 CDH26Q8IXH8 852 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 SYS1Q8N2H4 156 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 TEX19Q8NA77 164 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 STEAP2Q8NFT2 490 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 PHOSPHO1Q8TCT1 267 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 MYADMQ96S97 322 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 DUSP22Q9NRW4 184 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 HRASLS2Q9NWW9 162 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 SLC39A1Q9NY26 324 aa11.19□□□□□ -0.62
LDLR-205ENST00000557933 LINC01387J3KSC0 135 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 CYR61O00622 381 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 EIF1AYO14602 144 aaKnown RBP11.18□□□□□ -0.62
LDLR-205ENST00000557933 PNPP00491 289 aa11.18□□□□□ -0.62
LDLR-205ENST00000557933 VAMP1P23763 118 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms