RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 A0A1W2PQ72 361 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 SLC22A23A1A5C7 686 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 H0YC42 278 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 RAB40ALP0C0E4 278 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 EDNRAP25101 427 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 DPP4P27487 766 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 GDI2P50395 445 aaKnown RBP11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 DLX5P56178 289 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 OR10A3P58181 314 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 TMEM164Q5U3C3 297 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 C3orf33Q6P1S2 294 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 CEACAM19Q7Z692 300 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 GPAT4Q86UL3 456 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 ZNF227Q86WZ6 799 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 THOC3Q96J01 351 aaKnown RBP11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 MIXL1Q9H2W2 232 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 ABCB9Q9NP78 766 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 MRPL22Q9NWU5 206 aaKnown RBP11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 B3GAT1Q9P2W7 334 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 MRM2Q9UI43 246 aaKnown RBP11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 URB1O60287 2271 aaKnown RBP11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 SNX4O95219 450 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 HPP00738 406 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 IGHEP01854 428 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 OR2B6P58173 313 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 SIRPAP78324 504 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 CD83Q01151 205 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 CDK5R1Q15078 307 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 ACER2Q5QJU3 275 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 CDC20BQ86Y33 519 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 PRSS33Q8NF86 280 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 THEM6Q8WUY1 208 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 ASB10Q8WXI3 467 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 PTGES2Q9H7Z7 377 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 COA3Q9Y2R0 106 aaPredicted RBP11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 PCDHGB6Q9Y5F9 930 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 PEX16Q9Y5Y5 336 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 A3GALT2U3KPV4 340 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 IGLV1-36A0A0B4J1U3 117 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 IGHV3-15A0A0B4J1V0 119 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 TRBV2A0A0J9YWF9 115 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 NPIPA5E9PKD4 350 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 TERTO14746 1132 aaKnown RBP11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 RAD1O60671 282 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 BPNT1O95861 308 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 LIFP15018 202 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 AZGP1P25311 298 aaKnown RBP11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 ACTA2P62736 377 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 ACTG2P63267 376 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 HSF1Q00613 529 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 CSRP2Q16527 193 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 ODF4Q2M2E3 257 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 ZNF684Q5T5D7 378 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 STPG1Q5TH74 334 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 RAET1LQ5VY80 246 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 PIP4P1Q86T03 277 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 OR1J4Q8NGS1 313 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 NDEL1Q9GZM8 345 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 SERINC1Q9NRX5 453 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 DEPPQ9NTK1 212 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 NPIPA1Q9UND3 350 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 MOKQ9UQ07 419 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 PCDHGB7Q9Y5F8 929 aa11.42□□□□□ -0.58
VIPAS39-206ENST00000553888 ZIC3O60481 467 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 RFPL3SP0C7P2 107 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 GBX2P52951 348 aaPredicted RBP11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 PPP5CP53041 499 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 BIDP55957 195 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 RPS11P62280 158 aaKnown RBP eCLIP11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 STK11Q15831 433 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 ACSM3Q53FZ2 586 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 CCDC190Q86UF4 302 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 CENPSQ8N2Z9 138 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 OR14A2Q96R54 314 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 INTS14Q96SY0 518 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 SDHCQ99643 169 aaPredicted RBP11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 ALKBH4Q9NXW9 302 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 COMMD3Q9UBI1 195 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 LAMP5Q9UJQ1 280 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 IKZF2Q9UKS7 526 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 FRYQ5TBA9 3013 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 A0A075B6Q4 140 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 PINLYPA6NC86 204 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 ZNF593O00488 134 aaPredicted RBP11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 SNPHO15079 494 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 TRIM3O75382 744 aaPredicted RBP11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 SULT1C4O75897 302 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 IGHMP01871 453 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 RFC3P40938 356 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 P2RY4P51582 365 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 OC90Q02509 493 aaPredicted RBP11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 SPINK14Q6IE38 97 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 C5orf46Q6UWT4 87 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 LINC00299Q6ZSB3 139 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 SYS1Q8N2H4 156 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 YIPF7Q8N8F6 280 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 NSMAFQ92636 917 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 SMIM19Q96E16 107 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 CEP19Q96LK0 163 aa11.41□□□□□ -0.58
VIPAS39-206ENST00000553888 C14orf119Q9NWQ9 140 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms