RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 A0A1B0GU03 582 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 LYRM9A8MSI8 78 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 CENPXA8MT69 81 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 A8MUA0 341 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 CLDN11O75508 207 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 IGHV3-13P01766 116 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 CCDC166P0CW27 439 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 CTRB1P17538 263 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 GABRR2P28476 465 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 AQP2P41181 271 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 GPR6P46095 362 aaPredicted RBP4.43□□□□□ -1.7
SCFD1-208ENST00000553278 SLC26A2P50443 739 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 UBE2MP61081 183 aaKnown RBP4.43□□□□□ -1.7
SCFD1-208ENST00000553278 ATP6AP1Q15904 470 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 PSMD5Q16401 504 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 HSP90B2PQ58FF3 399 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 C6orf183Q5T699 404 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 ZNF658Q5TYW1 1059 aaPredicted RBP4.43□□□□□ -1.7
SCFD1-208ENST00000553278 CTRB2Q6GPI1 263 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 ZNF343Q6P1L6 599 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 METTL7BQ6UX53 244 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 GPRIN3Q6ZVF9 776 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 MOB1BQ7L9L4 216 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 C6orf223Q8N319 242 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 ARHGAP18Q8N392 663 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 OR51S1Q8NGJ8 323 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 DNASE2BQ8WZ79 361 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 FRAT1Q92837 279 aaPredicted RBP4.43□□□□□ -1.7
SCFD1-208ENST00000553278 NEIL2Q969S2 332 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 FAM131CQ96AQ9 280 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 APH1AQ96BI3 265 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 MED8Q96G25 268 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 ZBED3Q96IU2 234 aaPredicted RBP4.43□□□□□ -1.7
SCFD1-208ENST00000553278 OR5B12Q96R08 314 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 C19orf24Q9BVV8 132 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 Q9H3A6 140 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 CALYQ9NYX4 217 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 APOBEC3BQ9UH17 382 aaKnown RBP4.43□□□□□ -1.7
SCFD1-208ENST00000553278 MAP3K19Q56UN5 1328 aa4.43□□□□□ -1.7
SCFD1-208ENST00000553278 A0A1W2PPR1 153 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ERICH2A1L162 156 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 AGPAT2O15120 278 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 SCAMP2O15127 329 aaKnown RBP4.42□□□□□ -1.7
SCFD1-208ENST00000553278 RRP8O43159 456 aaKnown RBP4.42□□□□□ -1.7
SCFD1-208ENST00000553278 SNAPINO95295 136 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ETHE1O95571 254 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 TBX6O95947 436 aaPredicted RBP4.42□□□□□ -1.7
SCFD1-208ENST00000553278 SEMG1P04279 462 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ZNF250P15622 560 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ZP3P21754 424 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 CFHR2P36980 270 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ANP32AP39687 249 aaKnown RBP4.42□□□□□ -1.7
SCFD1-208ENST00000553278 BTDP43251 543 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 GPR4P46093 362 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 SUB1P53999 127 aaKnown RBP eCLIP4.42□□□□□ -1.7
SCFD1-208ENST00000553278 RPS15AP62244 130 aaKnown RBP4.42□□□□□ -1.7
SCFD1-208ENST00000553278 TNNC1P63316 161 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ZNF92Q03936 586 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ACVR1Q04771 509 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 TIMM50Q3ZCQ8 353 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ZNF772Q68DY9 489 aaPredicted RBP4.42□□□□□ -1.7
SCFD1-208ENST00000553278 CNIH2Q6PI25 160 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 DEGS2Q6QHC5 323 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ZNF589Q86UQ0 364 aaPredicted RBP4.42□□□□□ -1.7
SCFD1-208ENST00000553278 CDC20BQ86Y33 519 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 TRAM1L1Q8N609 369 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 TMEM252Q8N6L7 170 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 C9orf106Q8NAJ2 232 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ISOC2Q96AB3 205 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 SLC25A38Q96DW6 304 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 CNPY3Q9BT09 278 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 RIOK2Q9BVS4 552 aaKnown RBP4.42□□□□□ -1.7
SCFD1-208ENST00000553278 TREM1Q9NP99 234 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 AGPAT4Q9NRZ5 378 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ZNF580Q9UK33 172 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 ASF1AQ9Y294 204 aa4.42□□□□□ -1.7
SCFD1-208ENST00000553278 YARS2Q9Y2Z4 477 aaKnown RBP4.42□□□□□ -1.7
SCFD1-208ENST00000553278 MSH6P52701 1360 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 RLFQ13129 1914 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 CFAP65Q6ZU64 1925 aaKnown RBP4.41□□□□□ -1.7
SCFD1-208ENST00000553278 A0A0J9YWU9 116 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 OR6C74A6NCV1 312 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 PDZK1P1A8MUH7 402 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 PHF1O43189 567 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-208ENST00000553278 XRCC2O43543 280 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 GDF1P27539 372 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 OR1E1P30953 314 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 VDAC2P45880 294 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-208ENST00000553278 CSNK1G2P78368 415 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 TGFBR3Q03167 851 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 SYCP1Q15431 976 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 VAMP3Q15836 100 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 TRMT5Q32P41 509 aaKnown RBP4.41□□□□□ -1.7
SCFD1-208ENST00000553278 PRR30Q53SZ7 412 aaPredicted RBP4.41□□□□□ -1.7
SCFD1-208ENST00000553278 C1orf100Q5SVJ3 147 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 MBOAT1Q6ZNC8 495 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 PEX26Q7Z412 305 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 SNX20Q7Z614 316 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 COMTD1Q86VU5 262 aa4.41□□□□□ -1.7
SCFD1-208ENST00000553278 ZNF547Q8IVP9 402 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms