RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 EEF1A1P5Q5VTE0 462 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 C9orf135Q5VTT2 229 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 DMKNQ6E0U4 476 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM225Q6GV28 225 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 RPL13AP3Q6NVV1 102 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 MAMSTRQ6ZN01 415 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 MAMDC2Q7Z304 686 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ADGRG3Q86Y34 549 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 WDFY1Q8IWB7 410 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 LSMEM1Q8N8F7 131 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ZSCAN1Q8NBB4 408 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 OR5D18Q8NGL1 313 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 OR1N1Q8NGS0 311 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 OR2T4Q8NH00 348 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ADIPOR1Q96A54 375 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 CREB3L1Q96BA8 519 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 POM121Q96HA1 1249 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SEC22CQ9BRL7 303 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ELL3Q9HB65 397 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 FRRS1LQ9P0K9 344 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 FBXL2Q9UKC9 423 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SPATA2Q9UM82 520 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 FARSAQ9Y285 508 aaKnown RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 DENND4AQ7Z401 1863 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 FITM1A5D6W6 292 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 PLPP2O43688 288 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ORC5O43913 435 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 TRAPPC6AO75865 159 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 PNPP00491 289 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 IGHV3-9P01782 118 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 CALCBP10092 127 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 PNMTP11086 282 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ARSBP15848 533 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SLC2A5P22732 501 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 HOXD12P35452 270 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 DDOSTP39656 456 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 MAGEA8P43361 318 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 EFNB2P52799 333 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 AP2S1P53680 142 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 BIDP55957 195 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ACTC1P68032 377 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ACTA1P68133 377 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 NKPD1Q17RQ9 610 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM69Q5SWH9 247 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 LINC01590Q5TEZ4 76 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM205Q6UW68 189 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 CHMP1BQ7LBR1 199 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 NUP54Q7Z3B4 507 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 PPP1R3BQ86XI6 285 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 LRRC18Q8N456 261 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 MS4A15Q8N5U1 240 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM156Q8N614 296 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 OR10H5Q8NGA6 315 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 OR4K17Q8NGC6 315 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 OR51A2Q8NGJ7 313 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 RGP1Q92546 391 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SMIM19Q96E16 107 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 OR1F2PQ96R84 312 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SOX7Q9BT81 388 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 SLITRK2Q9H156 845 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 RBFOX1Q9NWB1 397 aaKnown RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 TAS2R5Q9NYW4 299 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 VSX1Q9NZR4 365 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-215ENST00000552823 KLHL9Q9P2J3 617 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF281Q9Y2X9 895 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 PCDHGB7Q9Y5F8 929 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 CACNG2Q9Y698 323 aa5.05□□□□□ -1.6
LIMA1-215ENST00000552823 AKAP6Q13023 2319 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 DIDO1Q9BTC0 2240 aaKnown RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 EML6Q6ZMW3 1958 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 TCRBV16S1A1N1A0A5B0 115 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 NOTOA8MTQ0 251 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF879B4DU55 563 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 MEN1O00255 615 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 ARPC1BO15143 372 aaKnown RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 FABP7O15540 132 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 LAMTOR5O43504 91 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 NUDT21O43809 227 aaKnown RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 SLC43A1O75387 559 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 GIMD1P0DJR0 217 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 SDHAP31040 664 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 GDNFP39905 211 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 DNASE1L1P49184 302 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 MTNR1BP49286 362 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 RAB15P59190 212 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 INSM1Q01101 510 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 IFITM2Q01629 132 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 CDC20Q12834 499 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 MFAP5Q13361 173 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 ALKBH1Q13686 389 aaKnown RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 RPL22L1Q6P5R6 122 aaKnown RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 DCXRQ7Z4W1 244 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 TMED4Q7Z7H5 227 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 ARHGEF39Q8N4T4 335 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 OR52B4Q8NGK2 314 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 OR2G2Q8NGZ5 317 aa5.04□□□□□ -1.6
LIMA1-215ENST00000552823 KCTD12Q96CX2 325 aaKnown RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 WDR89Q96FK6 387 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 FAM71F1Q96KD3 344 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-215ENST00000552823 UBL7Q96S82 380 aaPredicted RBP5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms