RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PTPRZ1P23471 2315 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 AGAP14A8MT82 685 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 C2orf74A8MZ97 194 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF736B4DX44 427 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SLC16A5O15375 505 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 PRAF2O60831 178 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TPPPO94811 219 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 EGFP01133 1207 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SEMG1P04279 462 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TPOP07202 933 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 NPPBP16860 134 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 RORAP35398 523 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SLC6A9P48067 706 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SNRPGP62308 76 aaKnown RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SPOCK1Q08629 439 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TEAD2Q15562 447 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 DMRTC1Q5HYR2 192 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ENPP7Q6UWV6 458 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 BAIAP2L2Q6UXY1 529 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ACOT4Q8N9L9 421 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ACBD4Q8NC06 268 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TMED6Q8WW62 240 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ZG16BQ96DA0 208 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 NMNAT3Q96T66 252 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 DPYSL5Q9BPU6 564 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 HCAR1Q9BXC0 346 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 NKX6-2Q9C056 277 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 PNO1Q9NRX1 252 aaKnown RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SIDT1Q9NXL6 827 aaKnown RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF223Q9UK11 482 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 INSL5Q9Y5Q6 135 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 IGLON5A6NGN9 336 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 D6RAR5 112 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 H0YIV9 168 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF593O00488 134 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 LCMT2O60294 686 aaKnown RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 MTRF1O75570 445 aaKnown RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 C1orf105O95561 183 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TSPAN15O95858 294 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 OLFM2O95897 454 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 CFDP00746 253 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 APOC1P02654 83 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 HPXP02790 462 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ATP1B1P05026 303 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SERPINA5P05154 406 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 HCKP08631 526 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 UBBP0CG47 229 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 UBCP0CG48 685 aaKnown RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 BTG1P62324 171 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ACTC1P68032 377 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ACTA1P68133 377 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 LTBQ06643 244 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 HNF4GQ14541 408 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 C14orf28Q4W4Y0 310 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 NKAPLQ5M9Q1 402 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TIGD3Q6B0B8 471 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 C1orf94Q6P1W5 598 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ZNF574Q6ZN55 896 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SLC16A13Q7RTY0 426 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SLC35F2Q8IXU6 374 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 BPIFB2Q8N4F0 458 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 FAM26EQ8N5C1 309 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TRAM1L1Q8N609 369 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 OR14K1Q8NGZ2 314 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 NR4A3Q92570 626 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TMEM106AQ96A25 262 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 C14orf79Q96F83 325 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 OR7D2Q96RA2 312 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 INTS14Q96SY0 518 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SLC38A3Q99624 504 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 OR8D2Q9GZM6 311 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 GABARAPL1Q9H0R8 117 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 DNTTIP1Q9H147 329 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 GLIPR2Q9H4G4 154 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 MYNNQ9NPC7 610 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SEMA4GQ9NTN9 838 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 TAAR2Q9P1P5 351 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 EPHA6Q9UF33 1036 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 LIPT1Q9Y234 373 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 MRPS33Q9Y291 106 aaKnown RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 LSM5Q9Y4Y9 91 aaKnown RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 PRSS47A8MTI9 375 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 PRKNO60260 465 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 CDC40O60508 579 aaKnown RBP eCLIP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SOD1P00441 154 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 IFNA21P01568 189 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 WNT1P04628 370 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ADRB1P08588 477 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 MAPK3P27361 379 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-203ENST00000547825 HLA-FP30511 346 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 CBX5P45973 191 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 CCR9P51686 369 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 WNT3P56703 355 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 SIRPAP78324 504 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 NTHL1P78549 312 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 MFSD13AQ14CX5 517 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 BATFQ16520 125 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 DEFB110Q30KQ9 67 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 ITPRIPL2Q3MIP1 535 aa5.01□□□□□ -1.61
LIMA1-203ENST00000547825 AMZ1Q400G9 498 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms