RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CSNK2A1P68400 391 aaPredicted RBP14.3□□□□□ -0.12
CUX1-211ENST00000546411 FAM57BQ71RH2 274 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 SLC16A9Q7RTY1 509 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 CSNK2A3Q8NEV1 391 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 KTI12Q96EK9 354 aaPredicted RBP14.3□□□□□ -0.12
CUX1-211ENST00000546411 SELENOIQ9C0D9 397 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 B3GAT2Q9NPZ5 323 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 A0A1B0GX78 115 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 A8MVM7 634 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 C4orf51C9J302 202 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 F5H5P2 479 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 NPR2P20594 1047 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 YIF1BQ5BJH7 314 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 LCN10Q6JVE6 187 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 IDO2Q6ZQW0 420 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 OR51T1Q8NGJ9 327 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 SFXN2Q96NB2 322 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 GON7Q9BXV9 100 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 MAN2C1Q9NTJ4 1040 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 A0A1B0GV50 99 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 PTGS2P35354 604 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 DDOSTP39656 456 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 FOXL2P58012 376 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 PUDPQ08623 228 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 PRTGQ2VWP7 1150 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 GPR155Q7Z3F1 870 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 GPR137CQ8N3F9 429 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 FAM3DQ96BQ1 224 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 DCLRE1CQ96SD1 692 aaKnown RBP14.3□□□□□ -0.12
CUX1-211ENST00000546411 KLF15Q9UIH9 416 aa14.3□□□□□ -0.12
CUX1-211ENST00000546411 ZNF236Q9UL36 1845 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 A0A1W2PQF6 199 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 NAP1L6A6NFF2 107 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 CSF1P09603 554 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 RAB3AP20336 220 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 CDK2P24941 298 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 HTR2CP28335 458 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 SDHAP31040 664 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 DLX5P56178 289 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 AIMP2Q13155 320 aaKnown RBP14.29□□□□□ -0.12
CUX1-211ENST00000546411 HTR4Q13639 388 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 OR5D14Q8NGL3 314 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 PELI1Q96FA3 418 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 DDOQ99489 341 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 OR51B6Q9H340 312 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 MEMO1Q9Y316 297 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 DNAH12Q6ZR08 3092 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 RALGAPA2Q2PPJ7 1873 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 A0A0B4J2E0 115 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 A0A1B0GX12 115 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 SHISA8B8ZZ34 492 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 NKX2-2O95096 273 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 CBX7O95931 251 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 FXYD4P59646 89 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 SORDQ00796 357 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 C17orf67Q0P5P2 114 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 ZNF681Q96N22 645 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 PSD2Q9BQI7 771 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 ERVMER34-1Q9H9K5 563 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 CTSFQ9UBX1 484 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 PLEKHB1Q9UF11 243 aaPredicted RBP14.29□□□□□ -0.12
CUX1-211ENST00000546411 FAM230AA0A1W2PPH8 454 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 OR6C68A6NDL8 312 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 HSPA12AO43301 675 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 SIGLEC6O43699 453 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 ATF1P18846 271 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 IL13RA1P78552 427 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 GPLD1P80108 840 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 TMEM201Q5SNT2 666 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 LANCL3Q6ZV70 420 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 RHBDD1Q8TEB9 315 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 ACKR4Q9NPB9 350 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 SIT1Q9Y3P8 196 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 MMACHCQ9Y4U1 282 aa14.29□□□□□ -0.12
CUX1-211ENST00000546411 ARHGEF17Q96PE2 2063 aaPredicted RBP14.29□□□□□ -0.12
CUX1-211ENST00000546411 HLA-AP01891 365 aaKnown RBP14.28□□□□□ -0.12
CUX1-211ENST00000546411 CSNK1A1P48729 337 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 DCDP81605 110 aaKnown RBP14.28□□□□□ -0.12
CUX1-211ENST00000546411 TMPRSS11FQ6ZWK6 438 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 CMIPQ8IY22 773 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 HSD17B8Q92506 261 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 HLA-CQ95604 372 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 C20orf85Q9H1P6 137 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 KLHL13Q9P2N7 655 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 ZNF646O15015 1829 aaPredicted RBP14.28□□□□□ -0.12
CUX1-211ENST00000546411 NUDT21O43809 227 aaKnown RBP14.28□□□□□ -0.12
CUX1-211ENST00000546411 INHBBP09529 407 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 EPXP11678 715 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 GABRR1P24046 479 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 CLDN17P56750 224 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 FAM53BQ14153 422 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 TCEAL6Q6IPX3 200 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 HEPHL1Q6MZM0 1159 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 KIAA1958Q8N8K9 716 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 CCDC74AQ96AQ1 378 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 SCGB3A2Q96PL1 93 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 ZNF442Q9H7R0 627 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 A0A0A6YYJ9 748 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 TNFRSF10AO00220 468 aa14.28□□□□□ -0.12
CUX1-211ENST00000546411 IGHG1P01857 330 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms