RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 COMTD1Q86VU5 262 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 TMEM156Q8N614 296 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 SCARB1Q8WTV0 552 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ARSGQ96EG1 525 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 PGAM5Q96HS1 289 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 SLC41A2Q96JW4 573 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 FYTTD1Q96QD9 318 aaKnown RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 ELF4Q99607 663 aaPredicted RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 HCAR1Q9BXC0 346 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ADGRL4Q9HBW9 690 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 SMCO4Q9NRQ5 59 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 MYEF2Q9P2K5 600 aaKnown RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 CES1P1Q9UKY3 287 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 SIGLEC7Q9Y286 467 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 DSPPQ9NZW4 1301 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ZNF705FA8MVS1 300 aaPredicted RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 EEF1E1-BLOC1S5C9J1V9 151 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 EIF4E2O60573 245 aaKnown RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 NKX2-2O95096 273 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 CSTBP04080 98 aaKnown RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 OR8U9P0C7N5 309 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ZNF705DP0CH99 300 aaPredicted RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 ZNF705BP0CI00 300 aaPredicted RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 IDH3GP51553 393 aaPredicted RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 DGCR2P98153 550 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 DUSP2Q05923 314 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 CHAF1BQ13112 559 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 MEF2DQ14814 521 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ARL6IP1Q15041 203 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 RBMS2Q15434 407 aaKnown RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 TMEM244Q5VVB8 128 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 BTF3L4Q96K17 158 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 WDR77Q9BQA1 342 aaPredicted RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 BARHL1Q9BZE3 327 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 GSX2Q9BZM3 304 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 NELFAQ9H3P2 528 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 MRPS18AQ9NVS2 196 aaKnown RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 VDAC3Q9Y277 283 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 IGKV1-8A0A0C4DH67 115 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 FRG2CA6NGY1 282 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ZNF780AO75290 641 aaPredicted RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 CRTAPO75718 401 aaPredicted RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 RAB3DO95716 219 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 IGHA1P01876 353 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 PSMB1P20618 241 aaKnown RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 SSTR2P30874 369 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 IFITM3Q01628 133 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 CD300CQ08708 224 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ZNF169Q14929 603 aaPredicted RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 SLC25A35Q3KQZ1 300 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 PDSS1Q5T2R2 415 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 PXDC1Q5TGL8 231 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 SHISA6Q6ZSJ9 500 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ZNF511Q8NB15 262 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 PXT1Q8NFP0 134 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 C16orf52Q8NHV5 167 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 DCUN1D4Q92564 292 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ZG16BQ96DA0 208 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 HIST1H2AAQ96QV6 131 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 PDCD1LG2Q9BQ51 273 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 MCOLN1Q9GZU1 580 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ERVMER34-1Q9H9K5 563 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 LHX9Q9NQ69 397 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 ADAM18Q9Y3Q7 739 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 A0A1W2PS29 197 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 H3BML4 177 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 AIPO00170 330 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 TO15178 435 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 AMY2BP19961 511 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 EGR3Q06889 387 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 MESP2Q0VG99 397 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 OR7E24Q6IFN5 339 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 PRSS45Q7RTY3 260 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 SLC51BQ86UW2 128 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 MCEMP1Q8IX19 187 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 GPBAR1Q8TDU6 330 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 HOXB13Q92826 284 aaPredicted RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 LPAR4Q99677 370 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 URM1Q9BTM9 101 aaKnown RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 MAN2C1Q9NTJ4 1040 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 HHLA2Q9UM44 414 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 MRPS2Q9Y399 296 aaKnown RBP5.29□□□□□ -1.56
VPS50-220ENST00000544910 BOLA1Q9Y3E2 137 aa5.29□□□□□ -1.56
VPS50-220ENST00000544910 DCDC2BA2VCK2 349 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 ZNF736B4DX44 427 aaPredicted RBP5.28□□□□□ -1.56
VPS50-220ENST00000544910 GABARAPH6UMI1 98 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 BHLHE40O14503 412 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 IMPA2O14732 288 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 PLPP2O43688 288 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 ICOSLGO75144 302 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 NTN1O95631 604 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 IL33O95760 270 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 SERPINF1P36955 418 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 CASRP41180 1078 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 VEGFCP49767 419 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 DUSP3P51452 185 aaPredicted RBP5.28□□□□□ -1.56
VPS50-220ENST00000544910 CCR9P51686 369 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 OR1D5P58170 312 aa5.28□□□□□ -1.56
VPS50-220ENST00000544910 DLX2Q07687 328 aaPredicted RBP5.28□□□□□ -1.56
VPS50-220ENST00000544910 INSL4Q14641 139 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms