RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CCNKO75909 580 aa12.4□□□□□ -0.42
RTN3-210ENST00000540798 ZFAND5O76080 213 aa12.4□□□□□ -0.42
RTN3-210ENST00000540798 GPANK1O95872 356 aa12.4□□□□□ -0.42
RTN3-210ENST00000540798 FBXO45P0C2W1 286 aa12.4□□□□□ -0.42
RTN3-210ENST00000540798 SNRPBP14678 240 aaKnown RBP12.4□□□□□ -0.42
RTN3-210ENST00000540798 DDOSTP39656 456 aa12.4□□□□□ -0.42
RTN3-210ENST00000540798 TRA2AQ13595 282 aaKnown RBP eCLIP12.4□□□□□ -0.423e-6■□□□□ 8.6
RTN3-210ENST00000540798 OR5AK2Q8NH90 309 aa12.4□□□□□ -0.42
RTN3-210ENST00000540798 ENKURQ8TC29 256 aa12.4□□□□□ -0.42
RTN3-210ENST00000540798 FRMD6Q96NE9 622 aa12.4□□□□□ -0.42
RTN3-210ENST00000540798 GFM1Q96RP9 751 aaKnown RBP12.4□□□□□ -0.42
RTN3-210ENST00000540798 THAP7Q9BT49 309 aaPredicted RBP12.4□□□□□ -0.42
RTN3-210ENST00000540798 MRPL22Q9NWU5 206 aaKnown RBP12.4□□□□□ -0.42
RTN3-210ENST00000540798 AK6Q9Y3D8 172 aaKnown RBP12.4□□□□□ -0.42
RTN3-210ENST00000540798 TRBV5-7A0A0A0MS05 114 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 ARPC4-TTLL3A0A0A6YYG9 625 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 ACOD1A6NK06 481 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 PLGP00747 810 aaPredicted RBP12.4□□□□□ -0.43
RTN3-210ENST00000540798 CFIP05156 583 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 IL11P20809 199 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 MSX1P28360 303 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 MAP2K6P52564 334 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 CLDN20P56880 219 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 ZFP36L1Q07352 338 aaKnown RBP12.4□□□□□ -0.43
RTN3-210ENST00000540798 MFSD13AQ14CX5 517 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 Q499Y3 187 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 OR5M10Q6IEU7 315 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 ELMOD2Q8IZ81 293 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 OR2I1PQ8NGU4 316 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 OR2G2Q8NGZ5 317 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 ELP5Q8TE02 316 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 ST6GAL2Q96JF0 529 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 AMELYQ99218 206 aa12.4□□□□□ -0.43
RTN3-210ENST00000540798 AKIRIN1Q9H9L7 192 aaPredicted RBP12.4□□□□□ -0.43
RTN3-210ENST00000540798 C2orf72A6NCS6 295 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 AIPO00170 330 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 ZNF254O75437 659 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 TSPAN9O75954 239 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 UBL3O95164 117 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 AHCYP23526 432 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 HLA-DMAP28067 261 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 PTGS2P35354 604 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 MMP15P51511 669 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 ROM1Q03395 351 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 NTRK2Q16620 822 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 ARSKQ6UWY0 536 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 BAIAP2L2Q6UXY1 529 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 PRSS35Q8N3Z0 413 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 ASB17Q8WXJ9 295 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 RFT1Q96AA3 541 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 C8orf44Q96CB5 159 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 OR8B4Q96RC9 309 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 MARVELD1Q9BSK0 173 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 TSPAN10Q9H1Z9 355 aaPredicted RBP12.39□□□□□ -0.43
RTN3-210ENST00000540798 MED11Q9P086 117 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 KCNG2Q9UJ96 466 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 A0A0B4J203 849 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 IFITM5A6NNB3 132 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 AGRPO00253 132 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 TFECO14948 347 aaPredicted RBP12.39□□□□□ -0.43
RTN3-210ENST00000540798 SLC43A1O75387 559 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 ZNF432O94892 652 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 UBE2NLQ5JXB2 153 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 PHF19Q5T6S3 580 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 ASB10Q8WXI3 467 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 ZNF486Q96H40 463 aaPredicted RBP12.39□□□□□ -0.43
RTN3-210ENST00000540798 ARL5BQ96KC2 179 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 POTEKPQ9BYX7 375 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 SLCO1C1Q9NYB5 712 aa12.39□□□□□ -0.43
RTN3-210ENST00000540798 NXT1Q9UKK6 140 aaKnown RBP12.39□□□□□ -0.43
RTN3-210ENST00000540798 TMEM212A6NML5 194 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 PATE3B3GLJ2 98 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 CTDSPLO15194 276 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 ITGA10O75578 1167 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 RPP14O95059 124 aaKnown RBP12.38□□□□□ -0.43
RTN3-210ENST00000540798 CER1O95813 267 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 CTLA4P16410 223 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 ZNF28P17035 718 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 MAPK3P27361 379 aaPredicted RBP12.38□□□□□ -0.43
RTN3-210ENST00000540798 DPP4P27487 766 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 PUDPQ08623 228 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 FOXF1Q12946 379 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 PCOLCEQ15113 449 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 ATAD3CQ5T2N8 411 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 BICRALQ6AI39 1079 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 LRRTM1Q86UE6 522 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 UBE2J2Q8N2K1 259 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 ADAMTS14Q8WXS8 1223 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 BRD7Q9NPI1 651 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 GSTZ1O43708 216 aaPredicted RBP12.38□□□□□ -0.43
RTN3-210ENST00000540798 EFNA2O43921 213 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 B3GALNT1O75752 331 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 OR6A2O95222 327 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 HLA-DOBP13765 273 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 SLC6A1P30531 599 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 MAGEB1P43366 347 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 KIR3DL2P43630 455 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 P2RX3P56373 397 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 CTAG1AP78358 180 aa12.38□□□□□ -0.43
RTN3-210ENST00000540798 PLPPR5Q32ZL2 321 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 271.5 ms