RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 GSKIPQ9P0R6 139 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 SLC23A2Q9UGH3 650 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 FOXJ3Q9UPW0 622 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 HS3ST3B1Q9Y662 390 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 TRBV11-1A0A0K0K1C0 115 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 AHRRA9YTQ3 701 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 PRICKLE3O43900 615 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 PPP1R3DO95685 299 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 TRGC2P03986 189 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 ASGR2P07307 311 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 SDC1P18827 310 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 CTHP32929 405 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 PTH2RP49190 550 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 ATP1B3P54709 279 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 FGF8P55075 233 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 CCL23P55773 120 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 WNT3AP56704 352 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 ST8SIA6P61647 398 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF322Q6U7Q0 402 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 SYT9Q86SS6 491 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 ACOT1Q86TX2 421 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 C7orf61Q8IZ16 206 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 FRMD1Q8N878 549 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 OR4S1Q8NGB4 309 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 PPP1R1CQ8WVI7 109 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 FCAMRQ8WWV6 532 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 HAS2Q92819 552 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 HLA-CQ95604 372 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 TAAR8Q969N4 342 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 MUCL1Q96DR8 90 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 SAT2Q96F10 170 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 FAM46AQ96IP4 442 aaKnown RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 CHST6Q9GZX3 395 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 ISG20L2Q9H9L3 353 aaKnown RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 PLEKHA2Q9HB19 425 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 COMMD9Q9P000 198 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 ABRACLQ9P1F3 81 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 EXOGQ9Y2C4 368 aaKnown RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 V9GYS6 101 aa8.64□□□□□ -1.03
CLIP1-214ENST00000540539 MTCL1Q9Y4B5 1905 aaKnown RBP8.64□□□□□ -1.03
CLIP1-214ENST00000540539 C20orf202A1L168 122 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 PEX12O00623 359 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 PLRG1O43660 514 aaKnown RBP8.63□□□□□ -1.03
CLIP1-214ENST00000540539 OR2J2O76002 312 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 AMBPP02760 352 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 MMP7P09237 267 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-214ENST00000540539 CXCL1P09341 107 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 PGA3P0DJD8 388 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 CCR5P51681 352 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 NAAAQ02083 359 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 MTAPQ13126 283 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 GPNMBQ14956 572 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 DCAF4L1Q3SXM0 396 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 MOGAT2Q3SYC2 334 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 NDUFAF7Q7L592 441 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 CEACAM19Q7Z692 300 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 S100A7AQ86SG5 101 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 MRPL52Q86TS9 123 aaKnown RBP8.63□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF280BQ86YH2 543 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 SLC35G3Q8N808 338 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 INO80EQ8NBZ0 244 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-214ENST00000540539 STEAP2Q8NFT2 490 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 OR5M8Q8NGP6 311 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 OR14K1Q8NGZ2 314 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 ZNF671Q8TAW3 534 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 CLP1Q92989 425 aaKnown RBP8.63□□□□□ -1.03
CLIP1-214ENST00000540539 SLC41A3Q96GZ6 507 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 SGCZQ96LD1 299 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 OR5B2Q96R09 309 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 SYT3Q9BQG1 590 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 CWH43Q9H720 699 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 NT5MQ9NPB1 228 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 TMEM161AQ9NX61 479 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 TAS2R13Q9NYV9 303 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 ADAM18Q9Y3Q7 739 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 SNX10Q9Y5X0 201 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 RALGAPA2Q2PPJ7 1873 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 A0A0B4J2A0 478 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 TEX13DA0A0J9YY54 714 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-214ENST00000540539 A0A1B0GTI1 187 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 YY2O15391 372 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 DFFBO76075 338 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 APODP05090 189 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 HLA-DQB2P05538 268 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 ANXA5P08758 320 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 TRGC1P0CF51 173 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 PRSS56P0CW18 603 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 TFPI2P48307 235 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 NPY4RP50391 375 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 KLF3P57682 345 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-214ENST00000540539 RAB1AP62820 205 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 CBFBQ13951 182 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 RGNQ15493 299 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 MAPK14Q16539 360 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 DUSP5Q16690 384 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 UBXN11Q5T124 520 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 ARMC12Q5T9G4 340 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 FRRS1Q6ZNA5 592 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 TMEM192Q8IY95 271 aa8.63□□□□□ -1.03
CLIP1-214ENST00000540539 LYG1Q8N1E2 194 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms