RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	TRBV5-3	A0A0A0MS03	114 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079		A0A1W2PPW3	197 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	AQP12B	A6NM10	295 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	FZD7	O75084	574 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	NCR1	O76036	304 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	AHSA1	O95433	338 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	IGHV2-5	P01817	119 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	DBI	P07108	87 aa	Known RBP	10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	IL7R	P16871	459 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	ZNF14	P17017	642 aa	Predicted RBP	10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	GTF2E2	P29084	291 aa	Known RBP	10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	CLDN17	P56750	224 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	COPZ1	P61923	177 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	RCN1	Q15293	331 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	MSMP	Q1L6U9	139 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	CEACAM16	Q2WEN9	425 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	PGS1	Q32NB8	556 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	RUNDC3A	Q59EK9	446 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	SPANXN4	Q5MJ08	99 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	C1orf140	Q5VVS0	124 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	WBP2NL	Q6ICG8	309 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	OR4F3	Q6IEY1	312 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	SLC2A7	Q6PXP3	512 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	LRRC74B	Q6ZQY2	392 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	DOK3	Q7L591	496 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	ZNF627	Q7L945	461 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	AQP12A	Q8IXF9	295 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	CLEC4F	Q8N1N0	589 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	VPS37A	Q8NEZ2	397 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	MFSD8	Q8NHS3	518 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	RNF217	Q8TC41	542 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	STK35	Q8TDR2	534 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	DVL3	Q92997	716 aa	Predicted RBP	10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	CCDC124	Q96CT7	223 aa	Known RBP	10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	GPA33	Q99795	319 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	SLC38A1	Q9H2H9	487 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	B3GNT2	Q9NY97	397 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	NKIRAS2	Q9NYR9	191 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	ACTR3B	Q9P1U1	418 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	BTNL2	Q9UIR0	455 aa		10.63	□□□□□ -0.71
CAPN1-223	ENST00000533079	PPIAL4E	A0A075B759	164 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	PPIAL4C	A0A0B4J2A2	164 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	PRSS51	A0A1B0GVH4	220 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	TCRBV3S1	A0A5B6	114 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	DNAJC9-AS1	A6NH13	148 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	PPIAL4D	F5H284	164 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	HMGN4	O00479	90 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	NPIPB7	O75200	414 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	ZCCHC18	P0CG32	403 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	PPIAL4F	P0DN26	164 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	PNMT	P11086	282 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	HOXB9	P17482	250 aa	Predicted RBP	10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	HOXB6	P17509	224 aa	Known RBP	10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	TCN1	P20061	433 aa	Predicted RBP	10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	MAD2L1BP	Q15013	274 aa	Predicted RBP	10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	LCN8	Q6JVE9	175 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	HMGN2P46	Q86SG4	172 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	DHFR2	Q86XF0	187 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	SLC26A7	Q8TE54	656 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	SNX33	Q8WV41	574 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	CCDC115	Q96NT0	180 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	TRIM15	Q9C019	465 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	PAIP1	Q9H074	479 aa	Known RBP	10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	C7orf69	Q9H7B7	122 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	MTHFD2L	Q9H903	347 aa	Predicted RBP	10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	SLAMF8	Q9P0V8	285 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	LRRC42	Q9Y546	428 aa		10.62	□□□□□ -0.71
CAPN1-223	ENST00000533079	SLC22A23	A1A5C7	686 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	PRAMEF27	A3QJZ7	478 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	CDHR4	A6H8M9	788 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	CLDN25	C9JDP6	229 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	FTCDNL1	E5RQL4	147 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079		H3BNX3	289 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	CLDN34	H7C241	214 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	CASQ2	O14958	399 aa	Predicted RBP	10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	ANP32D	O95626	131 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	RAB36	O95755	333 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	RNASE1	P07998	156 aa	Known RBP	10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	UMPS	P11172	480 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	GCH1	P30793	250 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	CHI3L1	P36222	383 aa	Predicted RBP	10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	CRYBB2	P43320	205 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	PTDSS1	P48651	473 aa	Known RBP	10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	GSK3B	P49841	420 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	SELENOV	P59797	346 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	LIPE	Q05469	1076 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	NKPD1	Q17RQ9	610 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	LIN52	Q52LA3	116 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	MTX3	Q5HYI7	312 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	C6orf10	Q5SRN2	563 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	C5orf46	Q6UWT4	87 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	PEX5L	Q8IYB4	626 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	TMEM123	Q8N131	208 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	SLC25A28	Q96A46	364 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	TIMD4	Q96H15	378 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	MS4A3	Q96HJ5	214 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	ZNF75A	Q96N20	296 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	OXGR1	Q96P68	337 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	OR2M2	Q96R28	347 aa		10.61	□□□□□ -0.71
CAPN1-223	ENST00000533079	VAPA	Q9P0L0	249 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms