RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 DPPA2Q7Z7J5 298 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 RETREG3Q86VR2 466 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 LRRC17Q8N6Y2 441 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 SLC30A7Q8NEW0 376 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 STON2Q8WXE9 905 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 RDH5Q92781 318 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 SH3GL3Q99963 347 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 SIKE1Q9BRV8 207 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 SOX7Q9BT81 388 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 C1orf198Q9H425 327 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 KAT8Q9H7Z6 458 aaKnown RBP12.68□□□□□ -0.38
VPS28-215ENST00000531924 TMEM38BQ9NVV0 291 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 TAS2R5Q9NYW4 299 aa12.68□□□□□ -0.38
VPS28-215ENST00000531924 DHHO43323 396 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 QDPRP09417 244 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 FAM157BP0CG42 384 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 IL2RGP31785 369 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 CDH15P55291 814 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 TAS2R41P59536 307 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 SRSF2Q01130 221 aaKnown RBP12.67□□□□□ -0.38
VPS28-215ENST00000531924 MAD2L1BPQ15013 274 aaPredicted RBP12.67□□□□□ -0.38
VPS28-215ENST00000531924 MMEL1Q495T6 779 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 METTL21CQ5VZV1 264 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 RGS7BPQ6MZT1 257 aaPredicted RBP12.67□□□□□ -0.38
VPS28-215ENST00000531924 TMEM154Q6P9G4 183 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 LRFN4Q6PJG9 635 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 SLC16A14Q7RTX9 510 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 HDXQ7Z353 690 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 LRP11Q86VZ4 500 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 WDFY1Q8IWB7 410 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 OR4K5Q8NGD3 323 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 OR1J2Q8NGS2 313 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 SNX33Q8WV41 574 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 TAMM41Q96BW9 452 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 ECSITQ9BQ95 431 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 KCNN2Q9H2S1 579 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 NARFLQ9H6Q4 476 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 ZNF224Q9NZL3 707 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 BAG5Q9UL15 447 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 SH3GLB1Q9Y371 365 aa12.67□□□□□ -0.38
VPS28-215ENST00000531924 IQCMA0A1B0GVH7 501 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 B4DSR2 109 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 PPIHO43447 177 aaKnown RBP12.66□□□□□ -0.38
VPS28-215ENST00000531924 TCF21O43680 179 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 IFNA14P01570 189 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 HPXP02790 462 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 MT-ND5P03915 603 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 LCKP06239 509 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 IGFBP1P08833 259 aaPredicted RBP12.66□□□□□ -0.38
VPS28-215ENST00000531924 SAGP10523 405 aaPredicted RBP12.66□□□□□ -0.38
VPS28-215ENST00000531924 NAT2P11245 290 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 ACHEP22303 614 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 RAD52P43351 418 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 DAP3P51398 398 aaKnown RBP12.66□□□□□ -0.38
VPS28-215ENST00000531924 SEC24CP53992 1094 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 FXNQ16595 210 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 TBC1D28Q2M2D7 210 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 VMACQ2NL98 169 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 ALKBH6Q3KRA9 238 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 RINLQ6ZS11 566 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 GLCCI1Q86VQ1 547 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 RFLNBQ8N5W9 214 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 SYT14Q8NB59 555 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 ICA1LQ8NDH6 482 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 OR4D11Q8NGI4 311 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 SYNPRQ8TBG9 265 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 C11orf40Q8WZ69 217 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 ZNF75AQ96N20 296 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 OR51B6Q9H340 312 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 TAAR3PQ9P1P4 343 aa12.66□□□□□ -0.38
VPS28-215ENST00000531924 STX18Q9P2W9 335 aaKnown RBP12.66□□□□□ -0.38
VPS28-215ENST00000531924 TPD52L2O43399 206 aaKnown RBP12.65□□□□□ -0.38
VPS28-215ENST00000531924 LYPD3O95274 346 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 THY1P04216 161 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 ASAH2BP0C7U1 165 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 PGA4P0DJD7 388 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 PGA3P0DJD8 388 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 DRD4P21917 467 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 COL8A2P25067 703 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 DVL1P1P54792 670 aaPredicted RBP12.65□□□□□ -0.38
VPS28-215ENST00000531924 TMEM33P57088 247 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 KLF3P57682 345 aaPredicted RBP12.65□□□□□ -0.38
VPS28-215ENST00000531924 HSF2Q03933 536 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 MOGQ16653 247 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 MSMPQ1L6U9 139 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 ELFN2Q5R3F8 820 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 SHQ1Q6PI26 577 aaKnown RBP12.65□□□□□ -0.38
VPS28-215ENST00000531924 DEF8Q6ZN54 512 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 CARM1Q86X55 608 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 RBM15BQ8NDT2 890 aaKnown RBP12.65□□□□□ -0.38
VPS28-215ENST00000531924 FGFBP3Q8TAT2 258 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 MCHR2Q969V1 340 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 SGTBQ96EQ0 304 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 ZNF416Q9BWM5 594 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 PCDHAC1Q9H158 963 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 ZNF385DQ9H6B1 395 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 NANOGQ9H9S0 305 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 HINT3Q9NQE9 182 aaKnown RBP12.65□□□□□ -0.38
VPS28-215ENST00000531924 MRGBPQ9NV56 204 aa12.65□□□□□ -0.38
VPS28-215ENST00000531924 ARGLU1Q9NWB6 273 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms